##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553007_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 884980 Sequences flagged as poor quality 0 Sequence length 46 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.864839883387194 33.0 31.0 34.0 30.0 34.0 2 32.08965061357319 33.0 31.0 34.0 30.0 34.0 3 32.27935320572216 34.0 31.0 34.0 30.0 34.0 4 35.976813035322834 37.0 35.0 37.0 35.0 37.0 5 35.676757666839926 37.0 35.0 37.0 35.0 37.0 6 35.746023638952295 37.0 35.0 37.0 35.0 37.0 7 35.59757282650455 37.0 35.0 37.0 33.0 37.0 8 35.91617550679111 37.0 35.0 37.0 35.0 37.0 9 37.36184320549617 39.0 37.0 39.0 34.0 39.0 10 36.94153314199191 39.0 37.0 39.0 33.0 39.0 11 37.096108386630206 39.0 37.0 39.0 34.0 39.0 12 36.850901715293 39.0 35.0 39.0 33.0 39.0 13 36.68208773079618 39.0 35.0 39.0 32.0 39.0 14 37.914584510384415 40.0 37.0 41.0 33.0 41.0 15 37.819586883319396 40.0 37.0 41.0 33.0 41.0 16 37.73358832967977 39.0 36.0 41.0 33.0 41.0 17 37.589865307690566 39.0 36.0 40.0 33.0 41.0 18 37.2568091934281 38.0 36.0 40.0 33.0 41.0 19 37.11711112115528 38.0 35.0 40.0 33.0 41.0 20 36.949012407060046 38.0 35.0 40.0 32.0 41.0 21 36.97784356708626 38.0 35.0 40.0 33.0 41.0 22 37.009455580917084 38.0 35.0 40.0 33.0 41.0 23 36.843977265022936 38.0 35.0 40.0 33.0 41.0 24 36.57874076250311 38.0 35.0 40.0 32.0 41.0 25 36.64923953083686 38.0 35.0 40.0 32.0 41.0 26 36.66597889217835 38.0 35.0 40.0 32.0 41.0 27 36.52542430337409 38.0 35.0 40.0 32.0 41.0 28 36.501830549842936 38.0 35.0 40.0 32.0 41.0 29 36.25835047119709 38.0 35.0 40.0 31.0 41.0 30 36.28680083165721 38.0 35.0 40.0 31.0 41.0 31 36.22238016678343 38.0 35.0 40.0 31.0 41.0 32 36.14566430879794 38.0 35.0 40.0 31.0 41.0 33 36.10779000655382 38.0 35.0 40.0 31.0 41.0 34 35.93123799407896 38.0 35.0 40.0 31.0 41.0 35 35.69438066396981 38.0 35.0 40.0 30.0 41.0 36 35.56726931682072 38.0 35.0 40.0 30.0 41.0 37 35.41313137020045 38.0 35.0 40.0 29.0 41.0 38 35.104272412935885 37.0 35.0 40.0 26.0 41.0 39 34.917241067594745 37.0 35.0 40.0 25.0 41.0 40 34.57939388460756 37.0 34.0 40.0 23.0 41.0 41 34.44395918551832 37.0 34.0 40.0 22.0 41.0 42 34.2368878392732 37.0 34.0 40.0 21.0 41.0 43 34.00406562860178 36.0 33.0 40.0 18.0 41.0 44 33.78729462812719 36.0 33.0 40.0 18.0 41.0 45 33.26958010350516 35.0 33.0 40.0 15.0 41.0 46 32.534217722434406 35.0 32.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 7.0 10 10.0 11 18.0 12 18.0 13 23.0 14 28.0 15 56.0 16 94.0 17 165.0 18 293.0 19 541.0 20 1037.0 21 1794.0 22 2909.0 23 4238.0 24 5803.0 25 7390.0 26 9020.0 27 10541.0 28 12225.0 29 14807.0 30 18794.0 31 24881.0 32 32637.0 33 45474.0 34 74024.0 35 119235.0 36 95083.0 37 93666.0 38 155251.0 39 154917.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.324188117245587 37.68977830007458 18.25815272661529 23.727880856064544 2 19.217270446789758 42.130443625844656 18.105380912562996 20.546905014802594 3 17.870686343194198 43.486406472462654 17.93577255983186 20.70713462451129 4 16.377206264548352 42.76955411421727 18.20436620036611 22.648873420868266 5 15.027684241451784 45.494813442111685 16.08025040113901 23.39725191529752 6 16.381613143799857 48.45465434247102 17.307961761847725 17.855770751881398 7 69.50936744333205 21.876426585911545 5.140229157721079 3.4739768130353226 8 71.51754841917331 20.951433930710298 4.2929783723925965 3.2380392777237907 9 66.37573730479784 23.78370132658365 6.427602883680987 3.412958484937513 10 30.757418246740038 47.33112612714412 10.550972903342448 11.360482722773396 11 23.3490022373387 41.69766548396574 22.82492259712084 12.128409681574725 12 23.911726818685167 38.51612465818437 24.614341567041063 12.957806956089405 13 18.52516441049515 42.76232231236864 23.418834323939524 15.293678953196682 14 13.646410088363577 43.99839544396483 27.006712016090763 15.348482451580828 15 12.056317656896201 44.91480033447083 29.42959162918936 13.599290379443604 16 14.265520124748582 43.62448868900992 27.62932495649619 14.480666229745303 17 14.509819430947593 42.41734276480825 25.776514723496575 17.296323080747587 18 15.891997559266876 43.023571154150375 25.731089968134874 15.353341318447875 19 16.46206693936586 44.10868042215643 25.129720445659785 14.299532192817917 20 16.90829171280707 42.89068679518181 26.646251892698142 13.55476959931298 21 16.739587335307014 44.7906167371014 24.336143189676605 14.133652737914982 22 16.18646749079075 43.08425049153653 24.57874754231734 16.150534475355375 23 14.458066848968338 44.00867816221836 24.6825916969875 16.850663291825803 24 13.120070510068023 42.770684083256114 28.61951682523899 15.489728581436868 25 14.17851250875726 44.045176162173156 26.336753372957585 15.439557956112 26 15.420009491739926 45.547582996225906 23.094533209790054 15.937874302244118 27 12.374064950620353 46.62659043142218 24.28416461388958 16.71518000406789 28 14.586883319397048 42.71350764989039 29.02935659562928 13.67025243508328 29 13.95104974123709 42.05812560735836 27.312368641099233 16.678456010305318 30 15.173337250559335 43.941896992022414 26.86716083979299 14.017604917625256 31 18.10854482587177 43.461095165992454 24.06189970394811 14.368460304187666 32 17.364460213790142 42.04535695721937 24.37885601934507 16.211326809645417 33 18.817939388460754 41.74060430744198 24.828583696806707 14.612872607290562 34 15.831205224976836 41.61088386178219 26.833148771723653 15.724762141517324 35 15.360573120296502 40.011186693484596 26.920834369138287 17.707405817080613 36 17.503898393184027 41.58229564509933 27.303554882596217 13.610251079120433 37 16.36590657415987 42.218694207778704 26.853375217519037 14.562024000542383 38 16.71687495762616 40.826120364302014 25.969400438427986 16.487604239643833 39 16.851793260864653 40.13842120725892 27.043323012949443 15.966462518926983 40 18.465389048340075 40.30350968383466 24.46089177156546 16.770209496259803 41 15.993242785147688 39.552419263712174 26.844674455919908 17.609663495220232 42 17.553617030893353 38.62301972925942 25.983073063798052 17.840290176049177 43 15.887138692399827 39.495355827250336 26.449072295419107 18.168433184930734 44 16.6785690072092 38.450699450835046 26.00499446315171 18.86573707880404 45 16.86975976858234 40.68713417252367 24.703157133494543 17.739948925399442 46 17.073832176998348 39.72993739971525 26.44523040068702 16.75100002259938 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 85024.0 1 63653.0 2 42282.0 3 25838.5 4 9395.0 5 7821.0 6 6247.0 7 6247.0 8 6174.0 9 6101.0 10 6578.5 11 7056.0 12 7161.0 13 7266.0 14 7922.0 15 8578.0 16 8556.0 17 8534.0 18 8154.5 19 7775.0 20 7775.0 21 10204.5 22 12634.0 23 12851.0 24 13068.0 25 12440.5 26 11813.0 27 16286.5 28 20760.0 29 25575.0 30 30390.0 31 30390.0 32 34907.5 33 39425.0 34 42385.5 35 45346.0 36 45170.5 37 44995.0 38 42484.0 39 39973.0 40 42720.0 41 45467.0 42 48417.5 43 51368.0 44 51368.0 45 50793.5 46 50219.0 47 52807.5 48 55396.0 49 54507.0 50 53618.0 51 50600.0 52 47582.0 53 40619.0 54 33656.0 55 28825.0 56 23994.0 57 23994.0 58 21480.5 59 18967.0 60 17764.0 61 16561.0 62 15396.0 63 14231.0 64 12434.5 65 10638.0 66 8383.5 67 6129.0 68 4894.5 69 3660.0 70 3660.0 71 3545.5 72 3431.0 73 2532.0 74 1633.0 75 1170.0 76 707.0 77 561.5 78 416.0 79 417.0 80 418.0 81 418.0 82 245.0 83 72.0 84 53.0 85 34.0 86 43.5 87 53.0 88 33.5 89 14.0 90 14.5 91 15.0 92 16.5 93 18.0 94 18.0 95 17.0 96 16.0 97 10.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 884980.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.99888658022591 #Duplication Level Percentage of deduplicated Percentage of total 1 77.12286347060508 15.423713992908791 2 10.064657166135552 4.025638742688057 3 3.3235102892033574 1.993995159659753 4 1.6184323403318421 1.2946737924826437 5 0.9271832366150845 0.927131619407592 6 0.6342187212496654 0.7610200963996783 7 0.490125062959407 0.6861368880975884 8 0.36168403661870757 0.5786622420972646 9 0.3215179442137001 0.5787000809853472 >10 3.559177930954549 16.506505327847098 >50 1.0834363896057824 15.249099933825894 >100 0.41260254334384683 16.65743207857295 >500 0.06526725238589048 8.989127111514938 >1k 0.013053450477178099 3.3118732794627936 >5k 5.675413250946998E-4 1.0007466570144095 >10k+ 0.0017026239752840997 12.015542997035206 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 73724 8.33058374200547 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 18264 2.0637754525526 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13874 1.567719044498181 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8817 0.9962937015525775 No Hit GCACAAGGGGGATTTTTTTAAAATAAGTAAATTTCTTATTGACGGC 1823 0.20599335578205158 No Hit TTCACTGGGAACAATAATTTTTTTTAATCTAAGTATAGGTAATATA 1718 0.19412868087414406 No Hit GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1613 0.18226400596623651 No Hit TGCTTTATTTCCTGAAGGCATATTTAGATCAAATCTATCAATCTCT 1567 0.17706614838753418 No Hit GAAGATGGGAGTTTTAATTTTCTCTTATTGACTTTTGCATCTTTAG 1504 0.16994734344278967 No Hit CATAGCGGCAAGATTTTTTTATTTCCCTCATTTCCTTCAATACTTC 1370 0.15480575832222196 No Hit AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1350 0.1525458202445253 No Hit ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1345 0.15198083572510115 No Hit ATCGAGGGGGGATTGATTGTTTTTCGTGTAATGAATTCTGTTAACT 1308 0.1477999502813623 No Hit AGACGAGGACGTGAAGGATAACTGGGATGATGATGATGATGAAAAT 1244 0.14056814843273296 No Hit ATTCTGGGGATTTTTAGTTTTTATGGGGATTTTTAGATGTGAAGAA 1172 0.13243237135302494 No Hit CAGCTAGGGATACAAATGTTAGCTTTTGAAAGTAATTGAAATAATG 1154 0.13039842708309793 No Hit TAGGGGGAGCGGGTCTACATGAATTATTTGCGATTGGTAATTATGT 1134 0.12813848900540126 No Hit AGCTCTGGGCTGTCTGTTATAAACGATTTTATTATAGTTGTTTATT 1129 0.1275735044859771 No Hit ATACAGGGAAAATGTGGGCCAAAAATTTGTTGCATCTTTTCATATA 1114 0.12587855092770459 No Hit CATCATGGGCTACTATTTAAATATTTTCATTTTATTGTGACTTTGT 1111 0.1255395602160501 No Hit AGAAACGGAAGAAAGGAAAGGAAAGAAAGAAATAAAAGAAAGAAAG 1105 0.12486157879274108 No Hit TTGTGAGGGAAAAATTTAATGATTGTATATGAAGATTTTAATGACT 1090 0.12316662523446857 No Hit TTTGTAGGGACTGTATTATTTGTATATAAATATGAACTATAGTTTT 1090 0.12316662523446857 No Hit GGCTTGCAGAATTCTTTCTTACTTAATTTTCATTGTAAATTTCCCC 1073 0.1212456778684264 No Hit GTGCAAAGGGATCTTCAATTTCTTAACTTTGGTATTAATAAACTTT 1069 0.12079369025288708 No Hit ATAACCGGGAATGTAACATTGAGTTAGTTTGTGTTACTCTGTGTTT 1068 0.12068069334900224 No Hit GCACTACTTCTGATTTTTGCAGTGTTCAGTCCTAGTTTTTCTTTAT 1028 0.1161608171936089 No Hit ACGTATGGGACAGATAGTTTTTTTGTTTACGATTTATGACAGGTTT 989 0.11175393794210038 No Hit GCAGTATGGGATTTCTAAAAATAATGTTAAGAATTTTTGCTGGTTT 978 0.11051097199936723 No Hit CGAGCAGGAGCACTTTACTAAAGTCTCTTTACATTCTCATATAGAA 973 0.10994598747994305 No Hit TATCTTGGGGAGATTCCTGAATTCATTCGGTTCATTGATGTTATAA 949 0.10723406178670704 No Hit ATCAACGGGAAAATAAATAAATAAATAAATCTTTTTTTAAAATTAC 921 0.1040701484779317 No Hit CAGCGAAGGGATGGATTTTGTTAAACAAATTTAAGGGATGATCAAT 919 0.10384415467016203 No Hit AGATATGGGAGCAGGTGGATTATTGTCAGTGTGTTTATATGTATAT 912 0.1030531763429682 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 906 0.1023751949196592 No Hit GATGAGGGGGAGAAGAAGGAAGAAGAGGAGAAGAAGGAAGAAGAGG 902 0.10192320730411987 No Hit GTAAACGGGAGATAATGTTGGATATATTTAGATTTTGCCAAGGGCT 894 0.10101923207304118 No Hit GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 891 0.10068024136138669 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5054351510768605 0.0 2 0.0 0.0 0.0 0.7174173427648083 0.0 3 0.0 0.0 0.0 0.9547108409229587 0.0 4 0.0 0.0 0.0 2.075414133652738 0.0 5 0.0 0.0 0.0 2.2479604058848786 0.0 6 0.0 0.0 0.0 3.066622974530498 0.0 7 0.0 0.0 0.0 3.6455061131325 0.0 8 0.0 0.0 0.0 3.925964428574657 0.0 9 0.0 0.0 0.0 4.588691269859206 0.0 10 0.0 0.0 0.0 5.435829058283803 0.0 11 0.0 0.0 0.0 6.493932066261385 0.0 12 0.0 0.0 0.0 6.997446269972203 0.0 13 0.0 0.0 0.0 7.184230152093833 0.0 14 0.0 0.0 0.0 7.384347668873873 0.0 15 0.0 0.0 0.0 7.55282605256616 0.0 16 0.0 0.0 0.0 7.89204275802843 0.0 17 0.0 0.0 0.0 8.308436348844042 0.0 18 0.0 0.0 0.0 8.81873036678795 0.0 19 0.0 0.0 0.0 9.076702298357025 0.0 20 0.0 0.0 0.0 9.360324527107958 0.0 21 0.0 0.0 0.0 9.672421975637867 0.0 22 0.0 0.0 0.0 10.014463603697259 0.0 23 0.0 0.0 0.0 10.355375262717802 0.0 24 0.0 0.0 0.0 10.586227937354517 0.0 25 0.0 0.0 0.0 10.78126059345974 0.0 26 0.0 0.0 0.0 10.957422766616194 0.0 27 0.0 0.0 0.0 11.201496079007436 0.0 28 0.0 0.0 0.0 11.413139279983728 0.0 29 0.0 0.0 0.0 11.631223304481457 0.0 30 0.0 0.0 0.0 11.900268932631246 0.0 31 1.1299690388483356E-4 0.0 0.0 12.112025130511425 0.0 32 1.1299690388483356E-4 0.0 0.0 12.304119867115642 0.0 33 1.1299690388483356E-4 0.0 0.0 12.49508463468101 0.0 34 1.1299690388483356E-4 0.0 0.0 12.695993129788244 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCGTAA 55 5.456968E-12 40.000004 13 ACTAGCT 55 5.456968E-12 40.000004 40 TCGTAAA 55 5.456968E-12 40.000004 14 TCACGCG 35 3.05532E-7 40.0 1 CGGAATA 80 0.0 40.0 19 AAGTACG 25 7.7931996E-5 40.0 1 TCGTTGA 40 1.9274012E-8 40.0 24 CGAACTG 40 1.9274012E-8 40.0 1 AAATCCG 40 1.9274012E-8 40.0 1 CGTATCG 20 0.0012556121 40.0 1 ATTAGCG 90 0.0 40.0 1 AATCACG 20 0.0012556121 40.0 1 GTCGAGC 20 0.0012556121 40.0 7 GGTCGAG 20 0.0012556121 40.0 6 GCGAATC 25 7.7931996E-5 40.0 28 TCCGATC 45 1.2205419E-9 40.0 10 TTTCGCC 20 0.0012556121 40.0 29 CATGAGT 20 0.0012556121 40.0 16 CGTTGAT 40 1.9274012E-8 40.0 25 GGCAACG 50 7.8216544E-11 40.0 1 >>END_MODULE