SRR3552996_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552996_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	648096
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCC	4325	0.6673394065076779	No Hit
CTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGCT	4295	0.6627104626475091	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGT	3518	0.5428208166691355	No Hit
AATCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCT	3283	0.5065607564311461	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2836	0.4375894929146299	No Hit
AAACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCT	1288	0.19873598972991657	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTT	1148	0.1771342517157952	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	789	0.12174122352244111	No Hit
AATGACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTT	762	0.11757517404828914	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	701	0.10816298819927912	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAT	20	7.031006E-4	45.000004	18
CGAACCG	20	7.031006E-4	45.000004	1
CAACGGA	20	7.031006E-4	45.000004	3
TTAGCTT	30	2.1640299E-6	45.000004	44
CGAAACG	45	3.8380676E-10	45.000004	1
ACGCATG	30	2.1640299E-6	45.000004	1
CGTGCGT	20	7.031006E-4	45.000004	17
CCGATAT	20	7.031006E-4	45.000004	45
TAGACGT	20	7.031006E-4	45.000004	26
TCCGAAC	20	7.031006E-4	45.000004	35
TCACACG	20	7.031006E-4	45.000004	1
GGGTATA	30	2.1640299E-6	45.000004	7
CGACCGA	30	2.1640299E-6	45.000004	28
TCGTGGG	80	0.0	45.000004	3
TAACCGC	20	7.031006E-4	45.000004	24
GCCGAAC	20	7.031006E-4	45.000004	22
CGCTCAC	20	7.031006E-4	45.000004	25
CTACGAC	20	7.031006E-4	45.000004	29
TACGACA	20	7.031006E-4	45.000004	30
TGCGACC	20	7.031006E-4	45.000004	18