##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552996_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 648096 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.196404545005677 31.0 31.0 34.0 28.0 34.0 2 31.41380752234237 31.0 31.0 34.0 28.0 34.0 3 31.40183244457611 31.0 31.0 34.0 28.0 34.0 4 35.415771737520366 37.0 35.0 37.0 33.0 37.0 5 35.069881622475684 37.0 35.0 37.0 32.0 37.0 6 35.14007955611515 37.0 35.0 37.0 32.0 37.0 7 35.06039537352491 37.0 35.0 37.0 32.0 37.0 8 35.44670542635659 37.0 35.0 37.0 33.0 37.0 9 35.888957808719695 39.0 37.0 39.0 32.0 39.0 10 35.76567977583568 38.0 35.0 39.0 30.0 39.0 11 36.140281686663705 38.0 35.0 39.0 32.0 39.0 12 35.73910809509702 37.0 35.0 39.0 31.0 39.0 13 35.425183923369374 37.0 35.0 39.0 30.0 39.0 14 36.49911587172271 38.0 35.0 40.0 31.0 41.0 15 36.61112859823236 38.0 35.0 40.0 31.0 41.0 16 36.641946563472075 38.0 35.0 40.0 31.0 41.0 17 36.58239674369229 38.0 35.0 40.0 31.0 41.0 18 36.45520262430257 38.0 35.0 40.0 31.0 41.0 19 36.48895379696835 38.0 35.0 40.0 31.0 41.0 20 36.400385128129166 38.0 35.0 40.0 31.0 41.0 21 36.41438922628746 38.0 35.0 40.0 31.0 41.0 22 36.396435096035155 38.0 35.0 40.0 31.0 41.0 23 36.33470041475337 38.0 35.0 40.0 31.0 41.0 24 35.953281612600605 38.0 34.0 40.0 30.0 41.0 25 36.07955457216215 38.0 34.0 40.0 30.0 41.0 26 35.90812317928208 38.0 34.0 40.0 30.0 41.0 27 35.83161136621735 38.0 34.0 40.0 30.0 41.0 28 35.77452723053375 38.0 34.0 40.0 29.0 41.0 29 35.485534550436974 37.0 34.0 40.0 29.0 41.0 30 35.605313101762704 38.0 34.0 40.0 29.0 41.0 31 35.40872185602133 37.0 34.0 40.0 29.0 41.0 32 35.303147990421174 37.0 34.0 40.0 28.0 41.0 33 35.28357527279909 37.0 34.0 40.0 28.0 41.0 34 35.092288796721476 37.0 34.0 40.0 27.0 41.0 35 35.036235372537405 37.0 34.0 40.0 27.0 41.0 36 34.789685478694516 37.0 33.0 40.0 26.0 41.0 37 34.638925406112676 37.0 33.0 40.0 25.0 41.0 38 34.608877388535035 37.0 33.0 40.0 26.0 41.0 39 34.428147990421174 36.0 33.0 40.0 25.0 41.0 40 34.273436342764036 36.0 33.0 40.0 24.0 41.0 41 34.248495593245444 36.0 33.0 40.0 24.0 41.0 42 34.27290864316397 36.0 33.0 40.0 24.0 41.0 43 34.20600497457167 36.0 33.0 40.0 24.0 41.0 44 34.15082024885202 36.0 33.0 40.0 24.0 41.0 45 33.91009973831037 35.0 33.0 39.0 23.0 41.0 46 33.70769145311806 35.0 33.0 39.0 23.0 41.0 47 33.57019793363946 35.0 33.0 39.0 23.0 40.0 48 33.459921061077374 35.0 32.0 39.0 23.0 40.0 49 33.33752561348936 35.0 32.0 39.0 22.0 40.0 50 33.21730268355305 35.0 32.0 39.0 22.0 40.0 51 31.35936651360292 34.0 29.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 5.0 9 15.0 10 21.0 11 20.0 12 16.0 13 27.0 14 31.0 15 72.0 16 165.0 17 330.0 18 595.0 19 1086.0 20 1801.0 21 2581.0 22 3525.0 23 4738.0 24 5886.0 25 6788.0 26 8430.0 27 9934.0 28 12104.0 29 15213.0 30 19451.0 31 24430.0 32 32290.0 33 43508.0 34 70524.0 35 72737.0 36 67161.0 37 85165.0 38 96648.0 39 62796.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.98700809756579 33.49364908902385 20.06153409371451 26.457808719695848 2 23.17573322470745 32.92984372685528 20.143157803782156 23.751265244655112 3 21.29237026613341 32.01717029575865 21.585073816224757 25.10538562188318 4 21.445279711647657 33.04433293833012 18.716054411692095 26.794332938330122 5 18.795209351700983 36.535328099540806 17.4634622031304 27.206000345627807 6 20.81558904853602 36.31684194934084 20.50220954920259 22.365359452920554 7 80.48761294623019 8.820606823680443 5.8850849256900215 4.806695304399349 8 82.59856564459587 6.3084789907668 4.7249172962030315 6.3680380684343065 9 75.99013109169012 11.283050659161606 7.764899027304597 4.961919221843678 10 46.188373327408286 27.726139337382115 10.948995210586085 15.136492124623512 11 37.31885399693873 25.298258282723545 19.86650125907273 17.516386461265 12 34.208358021033916 25.168184960252805 23.473682911173654 17.149774107539624 13 24.523681676788627 33.912722806497804 20.918197304103096 20.645398212610477 14 18.753548856959462 33.2009455389325 27.611187231521257 20.434318372586777 15 18.188354811632845 28.144132967955365 31.616149459339354 22.051362761072436 16 20.307639608946822 25.086406952056485 32.32622944748926 22.27972399150743 17 19.189132474201354 25.92548017577643 26.471541253147684 28.413846096874533 18 23.641713573297782 27.04012985730509 25.406421270922824 23.9117352984743 19 24.79092603564904 30.291037130301685 23.985181207722313 20.932855626326962 20 28.666277835382413 28.3104663506641 22.394213202982275 20.629042610971215 21 23.448995210586084 28.945094553893252 24.13222732434701 23.473682911173654 22 22.93302226830593 26.996309188762158 24.15305757171777 25.91761097121414 23 23.240538438749812 28.74188391843184 21.56316348195329 26.45441416086506 24 21.325544363797956 28.93151631857009 27.143972497901547 22.59896681973041 25 21.383714758307413 26.507338418999655 25.751586184762754 26.35736063793018 26 23.43510837900558 31.705333777711942 21.32106971806646 23.538488125216016 27 20.422128820421666 29.790339702760082 24.541271663457266 25.246259813360982 28 21.086690860613242 28.05973189157162 27.123759443045476 23.729817804769667 29 19.980527576161556 30.22823779193206 26.813311608156816 22.977923023749568 30 23.467665284155434 26.70175406112675 24.12327803288402 25.7073026218338 31 29.988767096232653 28.725682614921244 18.702013281982914 22.58353700686318 32 25.833209894830393 27.348880412778353 22.752339159630672 24.065570532760578 33 27.536661235372538 26.29116674072977 21.39837308053128 24.773798943366415 34 20.47351009726954 30.367106107737126 23.482323606379303 25.677060188614032 35 23.142404828914234 26.52261393373821 24.689706463240015 25.64527477410754 36 28.43760800869007 28.78045845059991 23.19255172073273 19.589381819977287 37 22.908334567718363 31.092461610625588 22.080216511134154 23.918987310521896 38 26.769645237742555 27.73694020638918 22.62025996148719 22.873154594381077 39 23.682911173653288 27.302899570434008 25.061873549597593 23.952315706315115 40 26.171894287266085 27.00988742408532 21.415345874685233 25.40287241396336 41 20.64894706956994 25.584481311410656 26.682929689428725 27.08364192959068 42 25.340535969979754 26.368161506937245 21.1147731200316 27.176529403051397 43 23.783204957290277 24.1072310275021 24.91714190490298 27.192422110304648 44 23.231589147286822 24.615797659605985 24.472608996198094 27.680004196909103 45 26.117118451587416 27.46306102799585 23.440971707895127 22.9788488125216 46 22.351164025082703 25.737236458796225 27.96098108922135 23.95061842689972 47 22.374617340640892 27.681701476324495 24.37077223127438 25.572908951760233 48 23.86745173554535 23.04056806399052 29.810398459487487 23.281581740976645 49 24.149971609144323 22.854021626425713 27.031489162099444 25.964517602330517 50 22.23652051547919 24.851102305831237 24.773798943366415 28.138578235323163 51 20.669931615069373 25.77827976102306 26.889997778106945 26.66179084580062 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3384.0 1 2784.5 2 2185.0 3 1548.5 4 912.0 5 854.0 6 796.0 7 911.5 8 1027.0 9 1082.5 10 1138.0 11 1188.5 12 1239.0 13 1367.0 14 1495.0 15 1660.0 16 1825.0 17 1833.5 18 1842.0 19 1824.0 20 1806.0 21 1764.5 22 1723.0 23 2078.5 24 2434.0 25 2101.0 26 2513.5 27 3259.0 28 3858.0 29 4457.0 30 5877.5 31 7298.0 32 7466.0 33 7634.0 34 8456.0 35 9278.0 36 10181.5 37 11085.0 38 12716.5 39 14348.0 40 20518.5 41 26689.0 42 30831.0 43 34973.0 44 46782.0 45 58591.0 46 59557.0 47 60523.0 48 60675.0 49 60827.0 50 57612.0 51 54397.0 52 49337.5 53 44278.0 54 41019.5 55 37761.0 56 35597.5 57 33434.0 58 32345.5 59 31257.0 60 30791.0 61 30325.0 62 27361.5 63 24398.0 64 21316.0 65 18234.0 66 16455.5 67 14677.0 68 12940.5 69 11204.0 70 10284.5 71 9365.0 72 7864.5 73 6364.0 74 5046.5 75 3217.5 76 2706.0 77 2204.5 78 1703.0 79 1265.5 80 828.0 81 648.5 82 469.0 83 336.0 84 203.0 85 146.0 86 89.0 87 69.0 88 49.0 89 44.0 90 39.0 91 39.5 92 40.0 93 24.5 94 9.0 95 5.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 648096.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.014166595530167 #Duplication Level Percentage of deduplicated Percentage of total 1 79.06935723515865 22.15062146187223 2 9.397156287327862 5.265070035148729 3 3.376985364253833 2.8381029175462205 4 1.5803106741627442 1.7708434599475884 5 0.8234872095486878 1.1534653938792598 6 0.48439571432384654 0.8141965343537446 7 0.35478927090901935 0.6957388019086367 8 0.23493008306218086 0.526509638816454 9 0.19931692652316343 0.5025327826436051 >10 2.6663836821275844 18.97419734365733 >50 1.504558280297213 30.252801656111185 >100 0.2983653101840315 10.810941105536456 >500 0.006089087962939418 1.0360452919183685 >1k 0.0038748741582341753 3.208933576660201 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCC 4325 0.6673394065076779 No Hit CTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCTGCT 4295 0.6627104626475091 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGT 3518 0.5428208166691355 No Hit AATCTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCT 3283 0.5065607564311461 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2836 0.4375894929146299 No Hit AAACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTTCT 1288 0.19873598972991657 No Hit AAAAACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTT 1148 0.1771342517157952 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 789 0.12174122352244111 No Hit AATGACTGTCTCTTATACACATCTGACGCCACGTGAATCGTATGCCGTCTT 762 0.11757517404828914 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 701 0.10816298819927912 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9109761516812324 0.0 2 0.0 0.0 0.0 1.1063175825803584 0.0 3 0.0 0.0 0.0 1.4497852170048882 0.0 4 0.0 0.0 0.0 3.339782995111835 0.0 5 0.0 0.0 0.0 3.571538784377623 0.0 6 0.0 0.0 0.0 4.80947267071545 0.0 7 0.0 0.0 0.0 5.7776934281341035 0.0 8 0.0 0.0 0.0 6.200316002567521 0.0 9 0.0 0.0 0.0 7.642232015010122 0.0 10 0.0 0.0 0.0 8.753024243321978 0.0 11 1.5429812867229545E-4 0.0 0.0 10.776952797116477 0.0 12 1.5429812867229545E-4 0.0 0.0 11.377944008295067 0.0 13 1.5429812867229545E-4 0.0 0.0 11.635158988791783 0.0 14 1.5429812867229545E-4 0.0 0.0 11.96689996543722 0.0 15 1.5429812867229545E-4 0.0 0.0 12.233218535525602 0.0 16 1.5429812867229545E-4 0.0 0.0 12.689323803880907 0.0 17 1.5429812867229545E-4 0.0 0.0 13.242482595171087 0.0 18 1.5429812867229545E-4 0.0 0.0 13.936361279810399 0.0 19 1.5429812867229545E-4 0.0 0.0 14.254832617390017 1.5429812867229545E-4 20 1.5429812867229545E-4 0.0 0.0 14.558799930874438 1.5429812867229545E-4 21 1.5429812867229545E-4 0.0 0.0 14.918314570680886 1.5429812867229545E-4 22 1.5429812867229545E-4 0.0 0.0 15.289092973880413 1.5429812867229545E-4 23 1.5429812867229545E-4 0.0 0.0 15.67807855626327 1.5429812867229545E-4 24 1.5429812867229545E-4 0.0 0.0 15.94424282822298 1.5429812867229545E-4 25 1.5429812867229545E-4 0.0 0.0 16.170598182985238 1.5429812867229545E-4 26 1.5429812867229545E-4 0.0 0.0 16.38723275564114 1.5429812867229545E-4 27 3.085962573445909E-4 0.0 0.0 16.631023798943367 1.5429812867229545E-4 28 3.085962573445909E-4 0.0 0.0 16.851978719202094 1.5429812867229545E-4 29 3.085962573445909E-4 0.0 0.0 17.096695551276355 1.5429812867229545E-4 30 3.085962573445909E-4 0.0 0.0 17.408069174937047 1.5429812867229545E-4 31 3.085962573445909E-4 0.0 0.0 17.645379696835036 1.5429812867229545E-4 32 3.085962573445909E-4 0.0 0.0 17.877906976744185 1.5429812867229545E-4 33 3.085962573445909E-4 0.0 0.0 18.125864069520564 1.5429812867229545E-4 34 4.628943860168864E-4 0.0 0.0 18.36286599516121 1.5429812867229545E-4 35 4.628943860168864E-4 0.0 0.0 18.650014812620352 1.5429812867229545E-4 36 4.628943860168864E-4 0.0 0.0 18.894268750308598 1.5429812867229545E-4 37 4.628943860168864E-4 0.0 0.0 19.135436725423393 1.5429812867229545E-4 38 4.628943860168864E-4 0.0 0.0 19.416722213992987 1.5429812867229545E-4 39 4.628943860168864E-4 0.0 0.0 19.665450797412728 1.5429812867229545E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAT 20 7.031006E-4 45.000004 18 CGAACCG 20 7.031006E-4 45.000004 1 CAACGGA 20 7.031006E-4 45.000004 3 TTAGCTT 30 2.1640299E-6 45.000004 44 CGAAACG 45 3.8380676E-10 45.000004 1 ACGCATG 30 2.1640299E-6 45.000004 1 CGTGCGT 20 7.031006E-4 45.000004 17 CCGATAT 20 7.031006E-4 45.000004 45 TAGACGT 20 7.031006E-4 45.000004 26 TCCGAAC 20 7.031006E-4 45.000004 35 TCACACG 20 7.031006E-4 45.000004 1 GGGTATA 30 2.1640299E-6 45.000004 7 CGACCGA 30 2.1640299E-6 45.000004 28 TCGTGGG 80 0.0 45.000004 3 TAACCGC 20 7.031006E-4 45.000004 24 GCCGAAC 20 7.031006E-4 45.000004 22 CGCTCAC 20 7.031006E-4 45.000004 25 CTACGAC 20 7.031006E-4 45.000004 29 TACGACA 20 7.031006E-4 45.000004 30 TGCGACC 20 7.031006E-4 45.000004 18 >>END_MODULE