SRR3552993_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552993_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	799612
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	9116	1.1400529256689493	TruSeq Adapter, Index 13 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4289	0.5363851467961962	No Hit
AATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	3280	0.4101989464890472	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCC	3198	0.39994397282682104	No Hit
AAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	2908	0.3636763830457772	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGT	2709	0.33878931281671615	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	2299	0.2875144445055852	No Hit
ACACCTGGGAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTC	1701	0.21272817316398454	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCT	1238	0.15482509016873183	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1075	0.13444020349869687	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	942	0.11780713646118368	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCT	887	0.1109288004682271	No Hit
ACACCTGGGAATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATG	822	0.10279985793109657	No Hit
ACACCTGGGAATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTT	820	0.1025497366222618	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	125	0.0	45.000004	1
GACAGCG	20	7.0319965E-4	45.000004	9
ATCTCGC	20	7.0319965E-4	45.000004	11
ATCTCGA	30	2.1646683E-6	45.000004	15
CCGGGTA	30	2.1646683E-6	45.000004	5
ATCTCCG	20	7.0319965E-4	45.000004	1
AGATCGC	20	7.0319965E-4	45.000004	42
CGAGTAG	20	7.0319965E-4	45.000004	1
GCGGTCC	20	7.0319965E-4	45.000004	12
CCTAGCG	40	6.8102963E-9	45.000004	1
CGCATCG	20	7.0319965E-4	45.000004	21
GACAACG	30	2.1646683E-6	45.000004	1
CGACACG	20	7.0319965E-4	45.000004	1
AGACGCG	20	7.0319965E-4	45.000004	1
TTCCCGG	30	2.1646683E-6	45.000004	2
ACTAGCG	30	2.1646683E-6	45.000004	1
CGCTCGA	30	2.1646683E-6	45.000004	21
GTTGTGC	20	7.0319965E-4	45.000004	33
CGTAGTG	20	7.0319965E-4	45.000004	38
CGCTATT	30	2.1646683E-6	45.000004	29