SRR3552992_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552992_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	806249
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	8483	1.052156343759806	TruSeq Adapter, Index 13 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4665	0.5786053688128605	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCC	3080	0.3820159776942359	No Hit
AATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	2832	0.3512562496201546	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGT	2658	0.329674827503662	No Hit
AAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	2623	0.3253337368480457	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	2113	0.2620778444376365	No Hit
ACACCTGGGAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTC	1661	0.2060157593993915	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCT	1110	0.13767458936383176	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1075	0.13333349870821545	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	932	0.11559704260098308	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	822	0.10195361482618892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGCG	35	1.2113196E-7	45.000004	1
TAGCGCG	35	1.2113196E-7	45.000004	1
GCGTTGG	35	1.2113196E-7	45.000004	2
ACTAGCG	35	1.2113196E-7	45.000004	1
TTTGCGC	35	1.2113196E-7	45.000004	13
TCATACG	35	1.2113196E-7	45.000004	1
CGATCGT	35	1.2113196E-7	45.000004	27
TCACGCG	45	3.8380676E-10	45.0	1
AACGTAA	25	3.8897662E-5	45.0	15
CTATGCG	25	3.8897662E-5	45.0	1
CGTGGAC	55	1.8189894E-12	45.0	45
CAGCGCG	85	0.0	45.0	1
TCGTTAC	20	7.0320326E-4	45.0	20
ACGCCTC	20	7.0320326E-4	45.0	23
TCCGCGA	25	3.8897662E-5	45.0	17
ATAGGCG	25	3.8897662E-5	45.0	1
TTTACGT	20	7.0320326E-4	45.0	37
GCGAATC	55	1.8189894E-12	45.0	14
GCGGTCC	20	7.0320326E-4	45.0	12
ACTTGGC	20	7.0320326E-4	45.0	35