##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552992_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 806249 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.940630003882177 31.0 31.0 33.0 28.0 34.0 2 31.160854773153208 31.0 31.0 34.0 28.0 34.0 3 31.187221317483804 31.0 31.0 34.0 28.0 34.0 4 35.24158293529666 37.0 35.0 37.0 33.0 37.0 5 34.88507892722968 35.0 35.0 37.0 32.0 37.0 6 34.92303370298754 35.0 35.0 37.0 32.0 37.0 7 34.95023001578917 35.0 35.0 37.0 32.0 37.0 8 35.334378089151116 37.0 35.0 37.0 33.0 37.0 9 35.699473735781375 39.0 35.0 39.0 32.0 39.0 10 35.31822303035415 37.0 35.0 39.0 29.0 39.0 11 35.85332198861642 37.0 35.0 39.0 30.0 39.0 12 35.827586762898314 37.0 35.0 39.0 31.0 39.0 13 35.59975020124056 37.0 35.0 39.0 30.0 39.0 14 36.54594548334323 38.0 35.0 40.0 31.0 41.0 15 36.59846399809488 38.0 35.0 40.0 31.0 41.0 16 36.606767884363265 38.0 35.0 40.0 31.0 41.0 17 36.60430338518249 38.0 35.0 40.0 31.0 41.0 18 36.44828210639641 38.0 35.0 40.0 31.0 41.0 19 36.456263511644664 38.0 35.0 40.0 31.0 41.0 20 36.35112353627726 38.0 35.0 40.0 30.0 41.0 21 36.351700281178644 38.0 35.0 40.0 30.0 41.0 22 36.35669377574422 38.0 35.0 40.0 30.0 41.0 23 36.270851808808445 38.0 35.0 40.0 30.0 41.0 24 35.883387142185605 38.0 34.0 40.0 29.0 41.0 25 36.02267785758494 38.0 34.0 40.0 30.0 41.0 26 35.89962530186084 38.0 34.0 40.0 30.0 41.0 27 35.72376647909021 38.0 34.0 40.0 29.0 41.0 28 35.70443870317979 38.0 34.0 40.0 29.0 41.0 29 35.43090906159264 38.0 34.0 40.0 27.0 41.0 30 35.347975625396124 38.0 34.0 40.0 27.0 41.0 31 35.31475263845289 38.0 34.0 40.0 27.0 41.0 32 35.08755483727732 38.0 34.0 40.0 27.0 41.0 33 35.07071016522191 38.0 34.0 40.0 27.0 41.0 34 35.070251249924034 38.0 34.0 40.0 26.0 41.0 35 34.95060458989717 38.0 34.0 40.0 25.0 41.0 36 34.82312040076949 38.0 33.0 40.0 25.0 41.0 37 34.61454091726005 37.0 33.0 40.0 24.0 41.0 38 34.642813820544276 37.0 33.0 40.0 25.0 41.0 39 34.484757190396515 37.0 33.0 40.0 24.0 41.0 40 34.37807550769055 37.0 33.0 40.0 24.0 41.0 41 34.53260097066787 37.0 33.0 40.0 24.0 41.0 42 34.47363531613683 37.0 33.0 40.0 24.0 41.0 43 34.37616914873693 37.0 33.0 40.0 24.0 41.0 44 34.27278793524085 37.0 33.0 40.0 23.0 41.0 45 34.06660225315008 37.0 33.0 40.0 23.0 41.0 46 33.828117616269914 37.0 32.0 40.0 23.0 41.0 47 33.72105515789787 37.0 32.0 40.0 22.0 41.0 48 33.63296822693734 36.0 32.0 40.0 22.0 41.0 49 33.51614327583662 36.0 32.0 39.0 21.0 41.0 50 33.3918789356638 36.0 32.0 39.0 20.0 40.0 51 31.555183324258387 35.0 29.0 38.0 14.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 14.0 11 11.0 12 12.0 13 19.0 14 31.0 15 66.0 16 171.0 17 351.0 18 859.0 19 1599.0 20 2663.0 21 3851.0 22 5385.0 23 6747.0 24 7959.0 25 9108.0 26 10522.0 27 12317.0 28 15425.0 29 18729.0 30 23775.0 31 30579.0 32 39322.0 33 52124.0 34 77571.0 35 87774.0 36 88976.0 37 111902.0 38 125600.0 39 72778.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.19177450142574 35.91198252648996 20.117358285095545 25.778884686988757 2 20.328831415604856 34.08711204603044 21.116429291695248 24.467627246669455 3 19.449946604584937 36.042835401966386 20.382040783926552 24.12517720952212 4 18.028673523936153 33.58193312487829 19.758040009972106 28.631353341213444 5 16.91388144357388 37.10987548511688 18.476674079595757 27.49956899171348 6 19.232519978319353 37.59979857339358 21.06520442195897 22.102477026328092 7 78.93231495480924 8.85173190912485 6.5526902979104475 5.663262838155458 8 81.79135726059815 7.003295507963421 5.149277704530486 6.05606952690794 9 73.16858687576668 13.392140641414748 9.08354615013476 4.355726332683823 10 32.95681607046955 42.67713820420242 11.109099050045334 13.256946675282698 11 25.62917907495079 26.52108715793756 31.90825663039582 15.941477136715829 12 27.269243124642635 25.54669835249408 30.825960714369877 16.358097808493405 13 23.156369806350146 33.01114171924554 25.623225579194518 18.209262895209793 14 15.463957164598034 36.461564603490984 30.487851767878162 17.586626464032822 15 13.9357692226595 32.32376102171909 34.274151037706716 19.46631871791469 16 16.102097490973634 30.576161954929553 33.072661175393705 20.249079378703104 17 15.563182093869262 29.25225333612817 28.831911729502917 26.352652840499648 18 19.2545975250822 28.826826451877768 28.315321941484576 23.60325408155545 19 20.306133713034065 32.25703225678419 28.63879521090879 18.798038819272954 20 23.085672044244397 31.467821975593147 26.141923896959874 19.304582083202586 21 18.625015348856248 33.101932529528725 26.72325795132769 21.549794170287342 22 18.212859798895874 29.762021410259116 27.098080121649765 24.927038669195248 23 18.863651303753556 30.802022700183194 24.841085074214046 25.493240921849203 24 14.724111285719424 32.68059867361075 29.306454953742577 23.28883508692724 25 16.372609454399324 31.31923264400948 27.849088805071386 24.45906909651981 26 20.120583095296862 34.60097314849383 24.080525991350065 21.19791776485924 27 15.55449991255803 34.70069420241141 26.033396630569467 23.711409254461092 28 18.708612351767258 29.83854863695955 29.153276469180117 22.299562542093078 29 19.859001375505585 31.117557975265708 26.81466891741881 22.2087717318099 30 18.8563334652198 32.03811725657955 24.602697181639915 24.50285209656074 31 25.756062953256375 31.546209669717417 21.196553422081763 21.50117395494444 32 22.733671607654706 32.227016715679646 22.99760991951618 22.041701757149465 33 22.827687228139197 29.100811287827955 22.933733871297825 25.137767612735022 34 19.32318675744094 29.279788254000934 25.992838440729848 25.404186547828278 35 19.815962562434187 28.378205740410223 26.60852912685783 25.197302570297765 36 24.03389027459259 27.580809402554294 28.434391856610052 19.95090846624306 37 20.07816443803341 32.129280160347484 26.453862268356303 21.3386931332628 38 21.892740332081033 29.956130178145955 27.120529761897377 21.030599727875632 39 20.384397375996745 28.50198883967608 27.934546275406234 23.17906750892094 40 22.276368714875925 27.284871051002852 25.544837885070244 24.893922349050975 41 18.55382146210414 23.62235488044016 32.32661373843565 25.497209919020055 42 23.3673468122131 25.493737046495564 27.106638271799405 24.03227786949193 43 21.281018643123897 25.678047352616872 28.237182309683483 24.803751694575745 44 21.584398864370684 26.88214186932325 25.80195448304432 25.731504783261748 45 24.092184920539435 28.50992683401778 24.756247759687145 22.64164048575564 46 19.496210227857645 28.130019386070554 29.343540271057698 23.030230115014096 47 20.38104853463384 26.38626528529028 26.500001860467425 26.732684319608456 48 21.537887178774795 22.9871913019427 33.99222820741483 21.482693311867674 49 21.9779497400927 22.520462040883153 30.103231135790555 25.39835708323359 50 19.46879934114647 24.017518161262835 27.634886989007118 28.878795508583575 51 18.73428680221619 23.810138059085965 31.318612488201538 26.136962650496308 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5549.0 1 4591.0 2 3633.0 3 2703.5 4 1774.0 5 1745.0 6 1716.0 7 1840.0 8 1964.0 9 2166.0 10 2368.0 11 2611.5 12 2855.0 13 3004.5 14 3154.0 15 3303.5 16 3453.0 17 3527.0 18 3601.0 19 3920.0 20 4239.0 21 4163.0 22 4087.0 23 4280.0 24 4473.0 25 4796.5 26 6055.0 27 6990.0 28 8261.0 29 9532.0 30 11011.0 31 12490.0 32 14443.5 33 16397.0 34 18416.0 35 20435.0 36 22061.0 37 23687.0 38 26082.5 39 28478.0 40 32718.5 41 36959.0 42 45404.0 43 53849.0 44 68026.5 45 82204.0 46 87584.5 47 92965.0 48 97261.5 49 101558.0 50 91801.0 51 82044.0 52 72454.5 53 62865.0 54 52392.0 55 41919.0 56 34709.0 57 27499.0 58 22369.0 59 17239.0 60 15689.0 61 14139.0 62 12507.0 63 10875.0 64 8334.5 65 5794.0 66 4627.0 67 3460.0 68 2923.0 69 2386.0 70 1804.5 71 1223.0 72 1188.5 73 1154.0 74 1007.0 75 680.0 76 500.0 77 424.0 78 348.0 79 281.5 80 215.0 81 144.5 82 74.0 83 66.0 84 58.0 85 42.5 86 27.0 87 23.5 88 20.0 89 14.0 90 8.0 91 8.0 92 8.0 93 5.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 806249.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.997238495622675 #Duplication Level Percentage of deduplicated Percentage of total 1 76.77001992757359 26.099686767914243 2 10.464612926922085 7.1153588288189225 3 4.105147061029347 4.1869099108025765 4 2.0290905752393544 2.7593390486253018 5 1.169422664229147 1.9878570608992392 6 0.7108366547093867 1.4499889968951363 7 0.509164338909729 1.2117127024366077 8 0.3895126037533987 1.0593882309484213 9 0.2854064514929684 0.8732728079636228 >10 2.6482577514261774 20.12077379756479 >50 0.6594002037063765 15.919002264289164 >100 0.24846964045629805 11.844938243824085 >500 0.006983614154836777 1.5854897820196219 >1k 0.003308027757554263 2.726247680826142 >5k 3.675586397282514E-4 1.0600338761721668 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT 8483 1.052156343759806 TruSeq Adapter, Index 13 (95% over 23bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4665 0.5786053688128605 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCC 3080 0.3820159776942359 No Hit AATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT 2832 0.3512562496201546 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGT 2658 0.329674827503662 No Hit AAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT 2623 0.3253337368480457 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT 2113 0.2620778444376365 No Hit ACACCTGGGAATGATACCTGTCTCTTATACACATCTGACGCCGAGACTTTC 1661 0.2060157593993915 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCT 1110 0.13767458936383176 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1075 0.13333349870821545 No Hit CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC 932 0.11559704260098308 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 822 0.10195361482618892 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.2403116158903762E-4 0.0 0.0 1.374513332729715 0.0 2 1.2403116158903762E-4 0.0 0.0 1.7053044406876783 0.0 3 1.2403116158903762E-4 0.0 0.0 2.202793429821308 0.0 4 1.2403116158903762E-4 0.0 0.0 4.837959488942002 0.0 5 1.2403116158903762E-4 0.0 0.0 5.228409585624292 0.0 6 1.2403116158903762E-4 0.0 0.0 7.241683400537551 0.0 7 1.2403116158903762E-4 0.0 0.0 8.838336543673233 0.0 8 1.2403116158903762E-4 0.0 0.0 9.760880323572493 0.0 9 1.2403116158903762E-4 0.0 0.0 11.56454147540028 0.0 10 1.2403116158903762E-4 0.0 0.0 13.756668225324931 0.0 11 1.2403116158903762E-4 0.0 0.0 16.44491962160573 0.0 12 1.2403116158903762E-4 0.0 0.0 17.651122668059124 0.0 13 1.2403116158903762E-4 0.0 0.0 18.224518728085243 0.0 14 1.2403116158903762E-4 0.0 0.0 18.71878290701756 0.0 15 1.2403116158903762E-4 0.0 0.0 19.09484538895552 0.0 16 1.2403116158903762E-4 0.0 0.0 19.971993763713197 0.0 17 1.2403116158903762E-4 0.0 0.0 21.08765406220659 0.0 18 1.2403116158903762E-4 0.0 0.0 22.690632794583312 0.0 19 1.2403116158903762E-4 0.0 0.0 23.33757933343173 0.0 20 1.2403116158903762E-4 0.0 0.0 24.153952439010776 0.0 21 1.2403116158903762E-4 0.0 0.0 24.860681997745115 0.0 22 1.2403116158903762E-4 0.0 0.0 25.670853545244707 0.0 23 1.2403116158903762E-4 0.0 0.0 26.413924234324632 0.0 24 1.2403116158903762E-4 0.0 0.0 26.949614821227684 0.0 25 2.4806232317807524E-4 0.0 0.0 27.405677402390577 0.0 26 2.4806232317807524E-4 0.0 0.0 27.841522904214454 0.0 27 2.4806232317807524E-4 0.0 0.0 28.387135984044633 0.0 28 2.4806232317807524E-4 0.0 0.0 28.84890399864062 0.0 29 2.4806232317807524E-4 0.0 0.0 29.326175908435236 0.0 30 2.4806232317807524E-4 0.0 0.0 30.030920968584148 0.0 31 2.4806232317807524E-4 0.0 0.0 30.531386705595914 0.0 32 2.4806232317807524E-4 0.0 0.0 30.960534524693983 0.0 33 2.4806232317807524E-4 0.0 0.0 31.405186238990684 0.0 34 2.4806232317807524E-4 0.0 0.0 31.844132519854288 0.0 35 2.4806232317807524E-4 0.0 0.0 32.337032356009125 0.0 36 2.4806232317807524E-4 0.0 0.0 32.796939903181276 0.0 37 2.4806232317807524E-4 0.0 0.0 33.24853736252696 0.0 38 2.4806232317807524E-4 0.0 0.0 33.67644487000914 0.0 39 2.4806232317807524E-4 0.0 0.0 34.10708106304628 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTGCG 35 1.2113196E-7 45.000004 1 TAGCGCG 35 1.2113196E-7 45.000004 1 GCGTTGG 35 1.2113196E-7 45.000004 2 ACTAGCG 35 1.2113196E-7 45.000004 1 TTTGCGC 35 1.2113196E-7 45.000004 13 TCATACG 35 1.2113196E-7 45.000004 1 CGATCGT 35 1.2113196E-7 45.000004 27 TCACGCG 45 3.8380676E-10 45.0 1 AACGTAA 25 3.8897662E-5 45.0 15 CTATGCG 25 3.8897662E-5 45.0 1 CGTGGAC 55 1.8189894E-12 45.0 45 CAGCGCG 85 0.0 45.0 1 TCGTTAC 20 7.0320326E-4 45.0 20 ACGCCTC 20 7.0320326E-4 45.0 23 TCCGCGA 25 3.8897662E-5 45.0 17 ATAGGCG 25 3.8897662E-5 45.0 1 TTTACGT 20 7.0320326E-4 45.0 37 GCGAATC 55 1.8189894E-12 45.0 14 GCGGTCC 20 7.0320326E-4 45.0 12 ACTTGGC 20 7.0320326E-4 45.0 35 >>END_MODULE