SRR3552989_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552989_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	591200
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGCT	6978	1.1803112313937754	Illumina Single End Adapter 2 (95% over 21bp)
AATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	4380	0.7408660351826792	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCC	4352	0.7361299052774019	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGT	3994	0.675575101488498	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3592	0.6075778078484438	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	2053	0.34725981055480376	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTT	1636	0.27672530446549387	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTT	1010	0.17083897158322056	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	891	0.1507104194857916	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	868	0.14682002706359945	No Hit
AACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTG	805	0.1361637347767253	No Hit
CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	752	0.12719891745602166	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	732	0.12381596752368065	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	707	0.1195872801082544	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	636	0.10757780784844384	No Hit
GCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	633	0.1070703653585927	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGTG	20	7.030503E-4	45.000004	45
ACGTTGT	20	7.030503E-4	45.000004	31
GCAACGT	20	7.030503E-4	45.000004	44
CCTACGC	20	7.030503E-4	45.000004	28
TAACGTT	20	7.030503E-4	45.000004	29
CCGTCAT	20	7.030503E-4	45.000004	17
AGTGCCG	20	7.030503E-4	45.000004	45
CTAGTAG	20	7.030503E-4	45.000004	1
CTACGCC	20	7.030503E-4	45.000004	29
CTACGAA	20	7.030503E-4	45.000004	10
CGCTACG	20	7.030503E-4	45.000004	1
ACTAAGC	20	7.030503E-4	45.000004	22
CTCGCGA	20	7.030503E-4	45.000004	18
CGTGTTA	20	7.030503E-4	45.000004	38
TACTAGA	20	7.030503E-4	45.000004	30
CGACTCG	40	6.8048394E-9	45.000004	1
TAGTGCG	20	7.030503E-4	45.000004	1
TAAGACG	20	7.030503E-4	45.000004	1
CCGCACG	20	7.030503E-4	45.000004	1
GCGTAAG	20	7.030503E-4	45.000004	1