SRR3552987_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552987_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	466158
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC	6670	1.430845335701629	No Hit
AATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	6341	1.36026840684918	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGT	5988	1.284543009022692	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	3364	0.7216437345277781	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3169	0.6798124241137125	No Hit
AAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	1556	0.33379240515018516	No Hit
AATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1486	0.31877603730923854	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	1223	0.26235739813539616	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1161	0.24905718661912915	No Hit
AACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTG	991	0.21258886471968733	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	755	0.16196225314163867	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTAT	699	0.14994915886888135	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	644	0.138150584136709	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	635	0.13621990827144442	No Hit
CGTAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	565	0.12120354043049782	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	564	0.12098902088991285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAGAC	95	0.0	45.000004	21
AATCACG	30	2.1627147E-6	45.000004	1
ATCACCG	60	0.0	45.000004	1
TCTAGCG	35	1.2098462E-7	45.000004	1
GCATTTA	30	2.1627147E-6	45.000004	11
AACGAGT	30	2.1627147E-6	45.000004	30
TTAACGG	35	1.2098462E-7	45.000004	2
CATAACG	35	1.2098462E-7	45.000004	1
ATACGAG	30	2.1627147E-6	45.000004	1
TAGTGCC	30	2.1627147E-6	45.000004	17
GCGTAAG	35	1.2098462E-7	45.000004	1
GATAGCG	35	1.2098462E-7	45.000004	1
GACTAGT	35	1.2098462E-7	45.000004	16
AAATGCG	30	2.1627147E-6	45.000004	1
GCATAAA	20	7.028968E-4	45.0	9
TCACGGA	20	7.028968E-4	45.0	43
CTATGCC	20	7.028968E-4	45.0	16
CCTTATC	20	7.028968E-4	45.0	42
GTCGCTC	20	7.028968E-4	45.0	37
TACCCGA	20	7.028968E-4	45.0	15