SRR3552986_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552986_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	471796
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC	6136	1.3005621073514824	No Hit
AATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	5736	1.2157797013963663	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGT	5721	1.2126003611730494	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	3251	0.6890690044002069	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3125	0.6623625465243452	No Hit
AATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1448	0.30691230955752064	No Hit
AAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT	1387	0.2939829926493654	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	1194	0.25307548177602185	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT	1047	0.22191794758751665	No Hit
AACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTG	975	0.20665711451559574	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	798	0.1691408998804568	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTAT	679	0.14391813410880974	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	606	0.12844534502200106	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT	575	0.12187470856047952	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	569	0.1206029724711528	No Hit
CGTAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	534	0.11318451195008013	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGTC	20	7.029052E-4	45.000004	44
TCGCACA	20	7.029052E-4	45.000004	24
CAAACCG	20	7.029052E-4	45.000004	1
AGATCAT	20	7.029052E-4	45.000004	31
CGAACAG	20	7.029052E-4	45.000004	1
GCGAATT	20	7.029052E-4	45.000004	9
CCTAGCG	20	7.029052E-4	45.000004	1
TAGACGT	30	2.1627711E-6	45.000004	18
TAGCGTG	20	7.029052E-4	45.000004	19
CGTTGAA	20	7.029052E-4	45.000004	20
CGTCTAC	20	7.029052E-4	45.000004	42
GATCAAT	20	7.029052E-4	45.000004	9
TACGGTG	20	7.029052E-4	45.000004	45
GTCTAAG	20	7.029052E-4	45.000004	23
TGCGGTT	20	7.029052E-4	45.000004	35
ACGGGTA	40	6.8012014E-9	45.000004	5
CACCTCG	20	7.029052E-4	45.000004	37
TCGTGTT	20	7.029052E-4	45.000004	42
GTAGCGC	20	7.029052E-4	45.000004	18
GCACAAT	40	6.8012014E-9	45.000004	35