##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552986_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 471796 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.14423818769129 31.0 31.0 34.0 28.0 34.0 2 31.345299663413847 31.0 31.0 34.0 28.0 34.0 3 31.32377976922229 31.0 31.0 34.0 28.0 34.0 4 35.332707356569365 37.0 35.0 37.0 33.0 37.0 5 34.97027952759243 35.0 35.0 37.0 32.0 37.0 6 35.045085163926785 36.0 35.0 37.0 32.0 37.0 7 34.91980644176721 36.0 35.0 37.0 32.0 37.0 8 35.31943679047724 37.0 35.0 37.0 33.0 37.0 9 35.80379443657852 39.0 35.0 39.0 32.0 39.0 10 35.68442080899372 38.0 35.0 39.0 30.0 39.0 11 36.066066689840525 37.0 35.0 39.0 31.0 39.0 12 35.665334169853075 37.0 35.0 39.0 31.0 39.0 13 35.423396976659404 37.0 35.0 39.0 30.0 39.0 14 36.4007346395476 38.0 35.0 40.0 31.0 41.0 15 36.54073370694113 38.0 35.0 40.0 31.0 41.0 16 36.54310549474773 38.0 35.0 40.0 31.0 41.0 17 36.50240146164868 38.0 35.0 40.0 31.0 41.0 18 36.3097821939991 38.0 35.0 40.0 30.0 41.0 19 36.31215398180569 38.0 35.0 40.0 30.0 41.0 20 36.2810706322224 38.0 34.0 40.0 30.0 41.0 21 36.30625100679107 38.0 35.0 40.0 31.0 41.0 22 36.28003204774945 38.0 35.0 40.0 30.0 41.0 23 36.218015837353434 38.0 35.0 40.0 30.0 41.0 24 35.83230040102078 38.0 34.0 40.0 30.0 41.0 25 35.91032988834157 38.0 34.0 40.0 30.0 41.0 26 35.79333016812351 38.0 34.0 40.0 30.0 41.0 27 35.71493823601726 38.0 34.0 40.0 29.0 41.0 28 35.54445777412271 37.0 34.0 40.0 29.0 41.0 29 35.34095880422895 37.0 34.0 40.0 28.0 41.0 30 35.362735165198515 37.0 34.0 40.0 28.0 41.0 31 35.25255618953955 37.0 34.0 40.0 27.0 41.0 32 35.137989724372396 37.0 34.0 40.0 27.0 41.0 33 35.09918057804644 37.0 34.0 40.0 27.0 41.0 34 34.92478952767722 37.0 34.0 40.0 27.0 41.0 35 34.863123044705766 37.0 33.0 40.0 26.0 41.0 36 34.7691714215466 37.0 33.0 40.0 26.0 41.0 37 34.5477049402708 37.0 33.0 40.0 25.0 41.0 38 34.58338349625686 37.0 33.0 40.0 25.0 41.0 39 34.32486710357867 36.0 33.0 40.0 24.0 41.0 40 34.186273304563834 36.0 33.0 40.0 24.0 41.0 41 34.22631391533629 36.0 33.0 40.0 24.0 41.0 42 34.23203460817811 36.0 33.0 40.0 24.0 41.0 43 34.292868104011056 36.0 33.0 40.0 24.0 41.0 44 34.23248395492967 36.0 33.0 40.0 24.0 41.0 45 33.98906730875209 36.0 33.0 39.0 23.0 41.0 46 33.73689899871979 35.0 33.0 39.0 23.0 40.0 47 33.599676555121285 35.0 32.0 39.0 23.0 40.0 48 33.48299264936541 35.0 32.0 39.0 23.0 40.0 49 33.36148250515053 35.0 32.0 39.0 22.0 40.0 50 33.272338044409025 35.0 32.0 39.0 22.0 40.0 51 31.309205673638605 34.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 6.0 10 11.0 11 12.0 12 14.0 13 21.0 14 29.0 15 68.0 16 121.0 17 252.0 18 486.0 19 883.0 20 1426.0 21 2089.0 22 2844.0 23 3540.0 24 4202.0 25 4817.0 26 5789.0 27 7349.0 28 8695.0 29 11267.0 30 14601.0 31 18522.0 32 24425.0 33 32838.0 34 51368.0 35 53952.0 36 50466.0 37 61350.0 38 68120.0 39 42232.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.441885899838066 37.94627338934624 16.07389634503048 25.537944365785215 2 20.82128716648721 37.166275254559174 18.836742999092827 23.175694579860785 3 20.046587932072335 31.890902000016958 23.3577647966494 24.70474527126131 4 23.18883585278383 31.59416357917405 18.028342758310796 27.188657809731325 5 16.71951436637869 38.42720158712664 19.023476248208972 25.8298077982857 6 21.08792783321605 35.28855691866824 21.69327421173558 21.93024103638013 7 75.54472695826162 11.181951521420274 7.6130361427396585 5.660285377578445 8 78.26666610145062 7.1378307573612325 5.155618106130616 9.439885035057523 9 72.6667881881152 11.923373661497767 9.619199823652595 5.790638326734436 10 43.49231447490017 27.89235177915879 12.393916014548662 16.221417731392382 11 35.44582828171498 24.72827238891385 21.733969766594036 18.091929562777132 12 32.052624439376345 23.681633587397943 27.7359282401716 16.529813733054116 13 23.992361105223445 33.595876183774344 21.896328073998085 20.51543463700413 14 17.27123587313161 33.89070700048326 30.6558343012658 18.182222825119332 15 16.748552340418314 28.362894132209682 31.940923619530476 22.947629907841524 16 18.331651815615224 24.912250209836454 33.96446769366421 22.791630280884114 17 17.963060305725357 27.31625533069377 26.495137729018474 28.22554663456239 18 21.035574697538767 27.507227700107673 26.212176449143275 25.245021153210285 19 22.871961610526583 30.470160832224096 26.190768891639603 20.46710866560971 20 25.928367345208525 30.3919490627305 23.57374797582006 20.105935616240917 21 22.03791469194313 29.837260171769152 23.94869816615656 24.176126970131158 22 21.017346480258418 29.708814826747155 24.28316475764949 24.990673935344937 23 22.85988011767798 29.13738141060967 20.757276449991096 27.245462021721252 24 19.17735631501751 30.876480512763994 27.22447837624736 22.72168479597114 25 20.319375323232922 27.788917243893547 25.848459927595822 26.043247505277705 26 22.82914649551925 31.93286929096474 21.486405141205097 23.751579072310914 27 19.826789544633698 29.941966443123725 25.423064205716027 24.80817980652655 28 20.783558995837183 30.660921245623108 26.172964586389032 22.382555172150674 29 19.922169751333204 29.792749408642717 26.04769858159035 24.23738225843373 30 24.629924798005916 28.20901406540115 22.724652180179568 24.436408956413366 31 26.05214965790299 30.020602124647095 18.979813309142088 24.947434908307827 32 25.722346098737592 28.579513179425003 21.064188759548617 24.633951962288787 33 24.64518563107784 28.594985968511814 20.030267318925976 26.72956108148437 34 18.460944984696777 31.180213482098196 22.363691086825664 27.99515044637937 35 22.682049021187122 27.934742982136346 25.5833029529712 23.79990504370533 36 24.62208242545507 27.070174397409048 23.648992361105222 24.658750816030658 37 22.623549161078095 31.08207784720515 21.354568499944893 24.939804491771866 38 23.136482717106546 28.190785848120797 23.27425412678361 25.398477307989047 39 21.241172031979925 28.945137305106446 24.716614808095024 25.097075854818605 40 23.035167741990183 26.61086571314721 23.5781990521327 26.77576749272991 41 19.272312609687237 24.81708195915184 28.852724482615365 27.05788094854556 42 23.55445997846527 25.26091785432687 25.345064392237322 25.83955777497054 43 22.091115651679964 23.734410635105004 26.521844186894334 27.6526295263207 44 22.654282783236823 24.045774020975166 24.812206970809417 28.487736224978594 45 25.122722532620028 27.898286547575644 23.440851554485413 23.53813936531891 46 20.486184706949615 25.853758827968022 30.613867010318017 23.04618945476435 47 22.953564676258384 26.19712757208624 24.231235534001986 26.618072217653392 48 22.13753401894039 22.793113972988323 32.23745008435849 22.831901923712792 49 23.284428015498225 21.385090166088734 28.43813851749485 26.892343300918192 50 20.4880923110836 24.651332355509584 25.38173278281291 29.478842550593903 51 20.424505506617265 23.81071480046461 30.003221731426294 25.76155796149183 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3681.0 1 3064.0 2 2447.0 3 1754.0 4 1061.0 5 1012.0 6 963.0 7 997.5 8 1032.0 9 1084.0 10 1136.0 11 1208.5 12 1281.0 13 1365.5 14 1450.0 15 1559.5 16 1669.0 17 1703.5 18 1738.0 19 1647.0 20 1556.0 21 1525.0 22 1494.0 23 1797.5 24 2101.0 25 1866.0 26 1870.0 27 2109.0 28 2577.0 29 3045.0 30 3544.0 31 4043.0 32 5111.0 33 6179.0 34 7208.5 35 8238.0 36 8533.0 37 8828.0 38 10109.5 39 11391.0 40 12963.0 41 14535.0 42 20891.5 43 27248.0 44 38967.5 45 50687.0 46 49957.0 47 49227.0 48 47064.0 49 44901.0 50 42418.0 51 39935.0 52 36610.5 53 33286.0 54 30953.5 55 28621.0 56 24851.5 57 21082.0 58 20222.0 59 19362.0 60 18859.5 61 18357.0 62 16514.0 63 14671.0 64 13294.5 65 11918.0 66 10200.5 67 8483.0 68 7662.0 69 6841.0 70 6076.5 71 5312.0 72 4342.5 73 3373.0 74 2974.0 75 2201.5 76 1828.0 77 1414.5 78 1001.0 79 853.0 80 705.0 81 586.0 82 467.0 83 308.5 84 150.0 85 109.0 86 68.0 87 53.0 88 38.0 89 28.5 90 19.0 91 17.0 92 15.0 93 14.5 94 14.0 95 8.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 471796.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.456386105392873 #Duplication Level Percentage of deduplicated Percentage of total 1 79.41275699659892 23.39212831785557 2 9.045906893848668 5.329194522772831 3 3.2700485403408517 2.889714371629695 4 1.4712541489499382 1.7335132108252234 5 0.855172606509211 1.2595147242045266 6 0.5523642501458444 0.9762392773867083 7 0.3560679453260993 0.7341932414095652 8 0.2856395407316509 0.6731126879006882 9 0.2283440671560779 0.6053571906322673 >10 3.1111305612823124 22.585881563463555 >50 1.1938545956265079 24.397151422862816 >100 0.2058619946314075 8.211101285795912 >500 0.005074063247957228 1.0112277847287665 >1k 0.004349197069677624 2.4452239422959954 >5k 0.002174598534838812 3.756446456235893 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCC 6136 1.3005621073514824 No Hit AATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT 5736 1.2157797013963663 No Hit AATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGT 5721 1.2126003611730494 No Hit CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT 3251 0.6890690044002069 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3125 0.6623625465243452 No Hit AATGACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT 1448 0.30691230955752064 No Hit AAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCT 1387 0.2939829926493654 No Hit AATGATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT 1194 0.25307548177602185 No Hit AAAAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTT 1047 0.22191794758751665 No Hit AACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTG 975 0.20665711451559574 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 798 0.1691408998804568 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCACGCACATTCGTAT 679 0.14391813410880974 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 606 0.12844534502200106 No Hit AAAAAACTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCT 575 0.12187470856047952 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 569 0.1206029724711528 No Hit CGTAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 534 0.11318451195008013 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9109869519877235 0.0 2 0.0 0.0 0.0 1.1642743897786332 0.0 3 0.0 0.0 0.0 1.7414306183180865 0.0 4 0.0 0.0 0.0 4.782363563913217 0.0 5 0.0 0.0 0.0 5.1524387659072985 0.0 6 0.0 0.0 0.0 6.862923806051768 0.0 7 0.0 0.0 0.0 8.147801168301553 0.0 8 0.0 0.0 0.0 8.69697920287582 0.0 9 0.0 0.0 0.0 10.92336518325717 0.0 10 0.0 0.0 0.0 12.302351016117136 0.0 11 0.0 0.0 0.0 15.30152862677937 0.0 12 0.0 0.0 0.0 16.058211599928782 0.0 13 0.0 0.0 0.0 16.42192812147623 0.0 14 0.0 0.0 0.0 16.889503090318698 0.0 15 0.0 0.0 0.0 17.20468168445684 0.0 16 0.0 0.0 0.0 17.689637046520104 0.0 17 0.0 0.0 0.0 18.26870087919355 0.0 18 0.0 0.0 0.0 19.10062823762813 0.0 19 0.0 0.0 0.0 19.45162739828231 0.0 20 0.0 0.0 0.0 19.80283851495138 0.0 21 0.0 0.0 0.0 20.171641980856133 0.0 22 0.0 0.0 0.0 20.54786390728196 0.0 23 0.0 0.0 0.0 20.931504294228862 0.0 24 0.0 0.0 0.0 21.22315577071446 0.0 25 0.0 0.0 0.0 21.443166114167987 0.0 26 0.0 0.0 0.0 21.66847535799371 0.0 27 0.0 0.0 0.0 21.89865959016185 0.0 28 0.0 0.0 0.0 22.123332965942907 0.0 29 0.0 0.0 0.0 22.364114998855438 0.0 30 2.1195601488779048E-4 0.0 0.0 22.705788094854555 0.0 31 2.1195601488779048E-4 0.0 0.0 22.967765729255866 0.0 32 2.1195601488779048E-4 0.0 0.0 23.21003145427261 0.0 33 2.1195601488779048E-4 0.0 0.0 23.462471068003968 0.0 34 2.1195601488779048E-4 0.0 0.0 23.702405276856947 0.0 35 2.1195601488779048E-4 0.0 0.0 23.995328489431873 0.0 36 2.1195601488779048E-4 0.0 0.0 24.23632247835929 0.0 37 2.1195601488779048E-4 0.0 0.0 24.485582751867334 0.0 38 2.1195601488779048E-4 0.0 0.0 24.735690849434924 0.0 39 2.1195601488779048E-4 0.0 0.0 24.986434815047183 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGTC 20 7.029052E-4 45.000004 44 TCGCACA 20 7.029052E-4 45.000004 24 CAAACCG 20 7.029052E-4 45.000004 1 AGATCAT 20 7.029052E-4 45.000004 31 CGAACAG 20 7.029052E-4 45.000004 1 GCGAATT 20 7.029052E-4 45.000004 9 CCTAGCG 20 7.029052E-4 45.000004 1 TAGACGT 30 2.1627711E-6 45.000004 18 TAGCGTG 20 7.029052E-4 45.000004 19 CGTTGAA 20 7.029052E-4 45.000004 20 CGTCTAC 20 7.029052E-4 45.000004 42 GATCAAT 20 7.029052E-4 45.000004 9 TACGGTG 20 7.029052E-4 45.000004 45 GTCTAAG 20 7.029052E-4 45.000004 23 TGCGGTT 20 7.029052E-4 45.000004 35 ACGGGTA 40 6.8012014E-9 45.000004 5 CACCTCG 20 7.029052E-4 45.000004 37 TCGTGTT 20 7.029052E-4 45.000004 42 GTAGCGC 20 7.029052E-4 45.000004 18 GCACAAT 40 6.8012014E-9 45.000004 35 >>END_MODULE