SRR3552984_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552984_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398097
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	13115	3.2944232184618323	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	11394	2.8621165193407636	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGT	10878	2.732499868122593	No Hit
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	5321	1.3366089169222577	TruSeq Adapter, Index 16 (95% over 22bp)
AATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT	2753	0.6915400015574094	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2273	0.5709663725172508	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT	2039	0.5121867283601735	No Hit
AACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG	1565	0.393120269683017	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTAT	1441	0.361972082180976	No Hit
AAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	1031	0.25898210737584054	No Hit
AATGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC	886	0.22255882360329268	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT	713	0.1791020781367355	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGGATCTGTCGTATGCC	572	0.14368357460618894	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	525	0.13187740676267343	No Hit
AATGATACGGCGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATG	493	0.12383916482666285	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTATCTGTC	445	0.11178180192264699	No Hit
AATGATCCGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	413	0.10374355998663642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATG	30	2.1619126E-6	45.000004	1
TAACCCG	30	2.1619126E-6	45.000004	1
ATCCCGG	30	2.1619126E-6	45.000004	2
TAGGGCG	30	2.1619126E-6	45.000004	5
GCGGCTA	60	0.0	45.000004	23
CGTAATG	30	2.1619126E-6	45.000004	1
AAGGGTC	30	2.1619126E-6	45.000004	5
ATCGCGG	30	2.1619126E-6	45.000004	2
TGATCGT	20	7.027726E-4	45.0	28
TCGCCTT	20	7.027726E-4	45.0	39
CCTTCCG	20	7.027726E-4	45.0	1
CTTAACG	35	1.209246E-7	45.0	1
AAGTAGT	20	7.027726E-4	45.0	23
AGACTCG	20	7.027726E-4	45.0	27
CAGCGCG	20	7.027726E-4	45.0	1
TCGTTGA	45	3.8380676E-10	45.0	24
TTGGCGG	25	3.8861963E-5	45.0	2
ATCTCGT	20	7.027726E-4	45.0	14
CTCACGG	70	0.0	45.0	2
GGAGCGT	20	7.027726E-4	45.0	35