##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552984_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 398097 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.00620954189557 31.0 31.0 33.0 28.0 34.0 2 31.209875984998632 31.0 31.0 34.0 28.0 34.0 3 31.126662597306687 31.0 31.0 34.0 28.0 34.0 4 35.112824261423725 35.0 35.0 37.0 32.0 37.0 5 34.74526560109722 35.0 35.0 37.0 32.0 37.0 6 34.81430656347574 35.0 35.0 37.0 32.0 37.0 7 34.70109797360945 35.0 35.0 37.0 32.0 37.0 8 35.11532867617691 37.0 35.0 37.0 32.0 37.0 9 35.77795110236952 39.0 35.0 39.0 32.0 39.0 10 35.48335707126655 37.0 35.0 39.0 30.0 39.0 11 35.91712070173852 37.0 35.0 39.0 31.0 39.0 12 35.54544244241981 37.0 35.0 39.0 30.0 39.0 13 35.477574560973835 37.0 35.0 39.0 30.0 39.0 14 36.35797305681781 38.0 35.0 40.0 31.0 41.0 15 36.533781967711384 38.0 35.0 40.0 31.0 41.0 16 36.40578301268284 38.0 35.0 40.0 31.0 41.0 17 36.3695154698478 38.0 35.0 40.0 31.0 41.0 18 36.10813696159479 38.0 35.0 40.0 30.0 41.0 19 36.13572822704015 38.0 34.0 40.0 30.0 41.0 20 36.265671431836964 38.0 34.0 40.0 30.0 41.0 21 36.42858147637385 38.0 35.0 40.0 31.0 41.0 22 36.42537622740186 38.0 35.0 40.0 31.0 41.0 23 36.400892244854894 38.0 35.0 40.0 31.0 41.0 24 35.9828810566269 38.0 34.0 40.0 30.0 41.0 25 36.10040266568198 38.0 34.0 40.0 30.0 41.0 26 35.991662835941995 38.0 34.0 40.0 30.0 41.0 27 35.872493387290035 38.0 34.0 40.0 30.0 41.0 28 35.82296023330997 38.0 34.0 40.0 30.0 41.0 29 35.67443361793734 38.0 34.0 40.0 29.0 41.0 30 35.50527886419641 38.0 34.0 40.0 29.0 41.0 31 35.368352436717686 37.0 34.0 40.0 28.0 41.0 32 35.43296985408079 38.0 34.0 40.0 29.0 41.0 33 35.442550433688275 38.0 34.0 40.0 29.0 41.0 34 35.58510363052221 38.0 34.0 40.0 29.0 41.0 35 35.238238419279725 38.0 34.0 40.0 27.0 41.0 36 35.14915711497449 37.0 34.0 40.0 27.0 41.0 37 34.77501714406288 37.0 33.0 40.0 25.0 41.0 38 34.87715054371171 37.0 33.0 40.0 26.0 41.0 39 34.94299630492066 37.0 33.0 40.0 26.0 41.0 40 34.76542149275177 37.0 33.0 40.0 26.0 41.0 41 34.97975870202488 37.0 34.0 40.0 26.0 41.0 42 34.947811714230454 37.0 34.0 40.0 26.0 41.0 43 34.881435931443846 37.0 33.0 40.0 26.0 41.0 44 34.773238683034535 37.0 33.0 40.0 26.0 41.0 45 34.43933011301266 37.0 33.0 40.0 25.0 41.0 46 34.16645691879115 37.0 33.0 40.0 24.0 41.0 47 33.99268519983823 36.0 33.0 40.0 23.0 40.0 48 33.98723929092658 36.0 33.0 40.0 23.0 41.0 49 33.86434964342861 36.0 32.0 39.0 23.0 40.0 50 33.699475253518614 36.0 32.0 39.0 23.0 40.0 51 31.651172955335007 35.0 29.0 38.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 2.0 11 3.0 12 4.0 13 7.0 14 3.0 15 25.0 16 58.0 17 133.0 18 264.0 19 475.0 20 867.0 21 1258.0 22 1753.0 23 2363.0 24 2996.0 25 3571.0 26 4512.0 27 5812.0 28 7249.0 29 9379.0 30 12633.0 31 16129.0 32 21286.0 33 27844.0 34 41408.0 35 45465.0 36 43231.0 37 52701.0 38 60287.0 39 36374.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.038309758676906 43.03649613034009 17.632386076760188 22.292808034222816 2 17.66780458029073 42.5079817230474 19.692185572862893 20.132028123798975 3 18.492477963913316 28.2117172447921 31.99496605098757 21.30083874030701 4 26.6892239830996 28.318977535625738 18.604762155956966 26.3870363253177 5 15.46155836391633 40.91741459995931 19.782364599582515 23.838662436541846 6 21.583181988309384 31.257959743479603 27.837687799707105 19.321170468503908 7 69.53606784276194 14.375893312433904 9.503713918969497 6.584324925834658 8 72.42556462369724 4.76064878660226 6.228632720166191 16.58515386953431 9 69.69582790124015 10.906387136803342 12.106345940813421 7.291439021143089 10 36.12310567525 34.22959730919851 14.018693936402435 15.62860307914905 11 28.107973684805458 20.233008538120107 31.625960507112588 20.033057269961844 12 25.912277660972077 22.156660311431637 37.12562516170682 14.805436865889469 13 22.375953599248426 34.41271850830325 23.49050608268839 19.720821809759933 14 13.39271584563561 32.8548067430802 37.85233247173427 15.900144939549909 15 12.63837707895312 30.017809729789473 31.246655965757093 26.097157225500318 16 14.791118747440951 26.71509707433113 37.306485605267056 21.18729857296086 17 14.141025930866096 27.40588349070704 30.308944804909355 28.144145773517508 18 17.023238055046885 27.72766436320796 28.804537587572877 26.444559994172273 19 17.865997483025495 31.23761294357908 33.11353765539554 17.782851917999885 20 21.99087157150142 33.20170712163116 26.18180996088893 18.625611345978495 21 16.46558502073615 28.580471593606582 28.026335290142857 26.92760809551441 22 17.11768739779501 32.41270343659962 28.375998814359317 22.093610351246053 23 20.56081809207304 28.06954084054891 22.178765476755665 29.190875590622383 24 14.695915819511324 37.015099335086674 26.98136383846148 21.30762100694052 25 18.109907886771314 25.81632114786095 28.919584925282027 27.15418604008571 26 23.727885414861202 33.55991127790463 21.09460759563624 21.61759571159793 27 14.883809724765573 28.882910446448978 32.21903204495386 24.01424778383158 28 24.474185939607686 27.302139930720404 26.455863771894787 21.767810357777126 29 21.341783535168567 27.889433982170175 31.961808303001533 18.80697417965973 30 22.93787694958766 24.98787983833086 28.791726639487365 23.282516572594115 31 26.631197924124024 34.14067425778139 21.89139832754329 17.3367294905513 32 22.955962993943686 23.96827908776002 27.859541769970637 25.21621614832566 33 27.091136079900124 25.859275503206504 23.686187034818147 23.36340138207522 34 21.511089005945788 24.54025024051927 29.20494251401041 24.743718239524537 35 28.100437832990455 22.726873098767385 29.032622702507176 20.140066365734985 36 25.577434645325138 25.766082135760882 31.11101063308691 17.54547258582707 37 20.454813776541897 25.666860086863252 32.191149393238334 21.687176743356517 38 22.706777493927362 29.60635222068993 26.370457451324675 21.31641283405803 39 18.86675860405881 23.76581586899675 36.89603287640952 20.47139265053492 40 25.005463492565884 26.348352286000647 22.891405863395104 25.754778358038365 41 19.2400344639623 20.413366591559342 37.6445941567005 22.702004787777852 42 31.30141648894616 22.646993069528282 23.160184578130455 22.891405863395104 43 23.732406925950208 22.37369284370392 29.20921283003891 24.68468740030696 44 20.16669304214802 23.03659660836429 27.889936372291174 28.906773977196515 45 27.905510466042195 28.54907221104404 23.661067528768115 19.88434979414565 46 18.08478838072128 22.98962313205073 38.10779784826311 20.817790638964876 47 22.284267402165803 26.4641532088913 24.66283343004343 26.588745958899462 48 20.823568125356385 19.3148905919914 38.659171006061335 21.20237027659088 49 24.467403672974175 18.992356134308974 31.633496358927598 24.906743833789253 50 20.01446883548482 22.201373032200696 25.599791005709665 32.184367126604826 51 17.509049302054525 22.03759385275448 35.56545264093927 24.887904204251726 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2600.0 1 2031.0 2 1462.0 3 1015.0 4 568.0 5 503.0 6 438.0 7 477.0 8 516.0 9 538.5 10 561.0 11 596.5 12 632.0 13 738.5 14 845.0 15 865.5 16 886.0 17 874.5 18 863.0 19 947.5 20 1032.0 21 1069.0 22 1106.0 23 1189.5 24 1273.0 25 1842.5 26 2606.5 27 2801.0 28 3157.5 29 3514.0 30 4558.0 31 5602.0 32 6008.0 33 6414.0 34 7880.5 35 9347.0 36 10458.5 37 11570.0 38 12745.0 39 13920.0 40 15487.5 41 17055.0 42 21874.0 43 26693.0 44 46034.0 45 65375.0 46 62021.5 47 58668.0 48 51811.5 49 44955.0 50 39440.0 51 33925.0 52 30082.5 53 26240.0 54 22605.5 55 18971.0 56 15557.0 57 12143.0 58 10501.5 59 8860.0 60 7647.5 61 6435.0 62 5463.0 63 4491.0 64 3453.5 65 2416.0 66 1826.0 67 1236.0 68 1071.5 69 907.0 70 657.0 71 407.0 72 352.0 73 297.0 74 295.5 75 265.5 76 237.0 77 157.0 78 77.0 79 50.5 80 24.0 81 18.5 82 13.0 83 9.0 84 5.0 85 4.5 86 4.0 87 4.5 88 5.0 89 2.5 90 0.0 91 1.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 398097.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.73853629316568 #Duplication Level Percentage of deduplicated Percentage of total 1 78.95030505439311 25.057671223253575 2 9.480107012073438 6.017694409315745 3 3.2599156162268086 3.103948502948164 4 1.4851111221244446 1.885410129957228 5 0.8426076171889838 1.337156621952521 6 0.5699670107817318 1.0853951194561888 7 0.43943685480777345 0.9762957795409768 8 0.3880425505578886 0.9852722059339301 9 0.2876690381981375 0.8217174788344486 >10 3.527090106616256 26.32367769624122 >50 0.6820251937352733 14.349384772703552 >100 0.07665868342099827 4.384729324773297 >500 0.0031611828214844644 0.6762330678787718 >1k 0.004741774232226697 2.784695667503755 >5k 7.902957053711161E-4 1.334657327219193 >10k+ 0.0023708871161133484 8.876060672487423 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC 13115 3.2944232184618323 No Hit AATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT 11394 2.8621165193407636 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGT 10878 2.732499868122593 No Hit CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT 5321 1.3366089169222577 TruSeq Adapter, Index 16 (95% over 22bp) AATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT 2753 0.6915400015574094 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2273 0.5709663725172508 No Hit AATGATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT 2039 0.5121867283601735 No Hit AACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTG 1565 0.393120269683017 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTAT 1441 0.361972082180976 No Hit AAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT 1031 0.25898210737584054 No Hit AATGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTC 886 0.22255882360329268 No Hit AAAAACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT 713 0.1791020781367355 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGGATCTGTCGTATGCC 572 0.14368357460618894 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 525 0.13187740676267343 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATG 493 0.12383916482666285 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTATCTGTC 445 0.11178180192264699 No Hit AATGATCCGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC 413 0.10374355998663642 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.7694180061643268 0.0 2 0.0 0.0 0.0 2.0879333428787454 0.0 3 0.0 0.0 0.0 2.968874420053404 0.0 4 0.0 0.0 0.0 8.206542626545792 0.0 5 0.0 0.0 0.0 8.743095275774497 0.0 6 0.0 0.0 0.0 10.925477961401366 0.0 7 0.0 0.0 0.0 12.6235565703836 0.0 8 0.0 0.0 0.0 13.232453397036402 0.0 9 0.0 0.0 0.0 17.56029309439659 0.0 10 0.0 0.0 0.0 19.199592059221747 0.0 11 0.0 0.0 0.0 24.85977035747569 0.0 12 0.0 0.0 0.0 25.880124693228034 0.0 13 0.0 0.0 0.0 26.439033702841268 0.0 14 0.0 0.0 0.0 27.253910479104338 0.0 15 0.0 0.0 0.0 27.674159815321392 0.0 16 0.0 0.0 0.0 28.361931890971295 0.0 17 0.0 0.0 0.0 29.191377980743386 0.0 18 0.0 0.0 0.0 30.396863076084472 0.0 19 0.0 0.0 0.0 30.884181493455113 0.0 20 0.0 0.0 0.0 31.31573460739468 0.0 21 0.0 0.0 0.0 31.857562352893893 0.0 22 0.0 0.0 0.0 32.42476079950364 0.0 23 0.0 0.0 0.0 32.999746292988895 0.0 24 0.0 0.0 0.0 33.39487612315592 0.0 25 0.0 0.0 0.0 33.72469523759285 0.0 26 0.0 0.0 0.0 34.06255259396579 0.0 27 0.0 0.0 0.0 34.383328686224715 0.0 28 0.0 0.0 0.0 34.686521124248614 0.0 29 0.0 0.0 0.0 35.036435843525574 0.0 30 0.0 0.0 0.0 35.516720799202204 0.0 31 0.0 0.0 0.0 35.8897454640452 0.0 32 0.0 0.0 0.0 36.1936914872506 0.0 33 0.0 0.0 0.0 36.500651851182 0.0 34 0.0 0.0 0.0 36.84076996309945 0.0 35 0.0 0.0 0.0 37.22057689457594 0.0 36 0.0 0.0 0.0 37.55516871516239 0.0 37 0.0 0.0 0.0 37.88574141478082 0.0 38 0.0 0.0 0.0 38.214555748975755 0.0 39 0.0 0.0 0.0 38.54638442389669 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCATG 30 2.1619126E-6 45.000004 1 TAACCCG 30 2.1619126E-6 45.000004 1 ATCCCGG 30 2.1619126E-6 45.000004 2 TAGGGCG 30 2.1619126E-6 45.000004 5 GCGGCTA 60 0.0 45.000004 23 CGTAATG 30 2.1619126E-6 45.000004 1 AAGGGTC 30 2.1619126E-6 45.000004 5 ATCGCGG 30 2.1619126E-6 45.000004 2 TGATCGT 20 7.027726E-4 45.0 28 TCGCCTT 20 7.027726E-4 45.0 39 CCTTCCG 20 7.027726E-4 45.0 1 CTTAACG 35 1.209246E-7 45.0 1 AAGTAGT 20 7.027726E-4 45.0 23 AGACTCG 20 7.027726E-4 45.0 27 CAGCGCG 20 7.027726E-4 45.0 1 TCGTTGA 45 3.8380676E-10 45.0 24 TTGGCGG 25 3.8861963E-5 45.0 2 ATCTCGT 20 7.027726E-4 45.0 14 CTCACGG 70 0.0 45.0 2 GGAGCGT 20 7.027726E-4 45.0 35 >>END_MODULE