SRR3552981_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552981_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	477697
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGCT	4827	1.0104731660445847	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2714	0.5681425673596443	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT	1431	0.2995622748311168	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCC	1075	0.22503804713029388	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT	966	0.20222023583987336	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTT	950	0.19887083234770156	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGT	919	0.19238136308161868	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	675	0.1413029598259985	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	630	0.13188276250426526	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	575	0.12036918799992465	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	545	0.11408905645210249	TruSeq Adapter, Index 16 (95% over 21bp)
AAAAAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCT	493	0.10320349510254408	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	20	7.029141E-4	45.000004	2
GTCGCTC	20	7.029141E-4	45.000004	13
CGAACAC	20	7.029141E-4	45.000004	14
CTACTGA	20	7.029141E-4	45.000004	29
ACGTTGT	20	7.029141E-4	45.000004	39
CAATTAG	20	7.029141E-4	45.000004	1
CGTTCCG	20	7.029141E-4	45.000004	1
TTATCCG	35	1.2099372E-7	45.000004	1
ATCCGTG	20	7.029141E-4	45.000004	26
TATTGGT	20	7.029141E-4	45.000004	27
TCCAGTA	20	7.029141E-4	45.000004	32
GTTCGGA	20	7.029141E-4	45.000004	15
GTATGCG	20	7.029141E-4	45.000004	1
CGTAGCG	40	6.8012014E-9	45.000004	1
TGCGAAA	20	7.029141E-4	45.000004	29
ACTACCG	35	1.2099372E-7	45.000004	1
GATATCG	20	7.029141E-4	45.000004	40
GTCGTAC	20	7.029141E-4	45.000004	22
TGTTACG	40	6.8012014E-9	45.000004	1
TTGCGAA	20	7.029141E-4	45.000004	15