SRR3552980_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552980_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	491119
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGCT	4504	0.9170893408725787	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2769	0.5638144726634482	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT	1306	0.26592333019084985	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCC	980	0.19954430596250605	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGT	942	0.1918068736904905	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCT	868	0.1767392424239339	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTT	849	0.17287052628792615	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	735	0.1496582294718795	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	636	0.12950018223689166	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	543	0.11056383483432732	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGTCTTTCGTATGCCGTCTTCTGC	509	0.10364086911726078	TruSeq Adapter, Index 16 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGG	35	1.2100281E-7	45.0	2
GCATAAC	25	3.8875318E-5	45.0	23
TCACGCG	25	3.8875318E-5	45.0	1
TTGATCG	25	3.8875318E-5	45.0	1
CTTCGAC	20	7.0293376E-4	45.0	37
GTACCGC	20	7.0293376E-4	45.0	10
GGTACCG	20	7.0293376E-4	45.0	9
CCCCTAG	25	3.8875318E-5	45.0	1
CGAACAC	20	7.0293376E-4	45.0	14
TCCGCAC	20	7.0293376E-4	45.0	25
TTGGACG	20	7.0293376E-4	45.0	38
ATCTACG	20	7.0293376E-4	45.0	1
ACGTTAT	40	6.8012014E-9	45.0	16
GCGAACC	25	3.8875318E-5	45.0	36
GGGTCGT	25	3.8875318E-5	45.0	7
TCTTCGA	20	7.0293376E-4	45.0	36
CCGGCAC	25	3.8875318E-5	45.0	16
TTATGTC	20	7.0293376E-4	45.0	29
CTATACG	20	7.0293376E-4	45.0	1
TGGGTAC	25	3.8875318E-5	45.0	6