SRR3552976_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552976_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	603557
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCTGCT	4282	0.7094607468722921	TruSeq Adapter, Index 13 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCC	3734	0.6186656769783135	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGT	3358	0.5563683297517882	No Hit
AATCTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCT	3261	0.5402969396428174	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1474	0.24421885588270867	No Hit
AAACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTTCT	858	0.14215724446903938	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGTCACTGTCGTATGCCGTCTT	732	0.12128100577078883	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	701	0.11614478831328276	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGATCG	30	2.1637825E-6	45.000004	27
TCCGATT	30	2.1637825E-6	45.000004	37
ACGTTAG	30	2.1637825E-6	45.000004	1
GCAAACG	60	0.0	45.000004	1
TTATCCG	30	2.1637825E-6	45.000004	1
CGTTAGC	30	2.1637825E-6	45.000004	17
TATAGCG	30	2.1637825E-6	45.000004	1
ACGTAGG	30	2.1637825E-6	45.000004	2
ACTCACG	30	2.1637825E-6	45.000004	1
TCGACAG	30	2.1637825E-6	45.000004	1
CTATGCG	25	3.8885966E-5	45.0	1
TTAGGCG	20	7.030621E-4	45.0	1
CGAACAT	20	7.030621E-4	45.0	3
GTCGATG	20	7.030621E-4	45.0	13
ATCTACG	25	3.8885966E-5	45.0	1
CTCCGAT	20	7.030621E-4	45.0	36
GGTCGAT	20	7.030621E-4	45.0	12
CCGATTC	20	7.030621E-4	45.0	38
CGTGCGA	20	7.030621E-4	45.0	37
CGCATTG	45	3.8380676E-10	45.0	1