SRR3552971_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552971_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	510932
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	2992	0.5855965177362153	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	2291	0.44839626408210875	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	1980	0.38752710732543666	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT	1854	0.36286629140472704	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1590	0.31119601042800216	No Hit
AAACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	734	0.14365903877619723	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	632	0.12369552112609897	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	582	0.11390948306232532	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	60	0.0	45.000004	1
CGGGTAC	30	2.1631258E-6	45.000004	6
TCGTTCG	40	6.8030204E-9	45.000004	45
CGACGTC	20	7.029602E-4	45.000004	1
CGACGAT	20	7.029602E-4	45.000004	34
GCGAAGT	20	7.029602E-4	45.000004	17
GCGCGAC	30	2.1631258E-6	45.000004	9
GACGTGC	20	7.029602E-4	45.000004	39
GACGTAA	20	7.029602E-4	45.000004	42
CGCATAG	40	6.8030204E-9	45.000004	1
TGAACGT	20	7.029602E-4	45.000004	21
TGTATCG	35	1.2101555E-7	45.000004	35
CGTCTAT	20	7.029602E-4	45.000004	39
CTAAGCG	30	2.1631258E-6	45.000004	1
TGACGTA	20	7.029602E-4	45.000004	41
TACGGGT	60	0.0	45.000004	4
CACGAAC	20	7.029602E-4	45.000004	41
CGCGACG	65	0.0	45.000004	1
ACGGGTA	65	0.0	45.000004	5
ACCCTCG	20	7.029602E-4	45.000004	14