##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552971_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 510932 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.541737452341994 31.0 31.0 34.0 30.0 34.0 2 31.72658201091339 31.0 31.0 34.0 30.0 34.0 3 31.924939130843242 33.0 31.0 34.0 30.0 34.0 4 35.72596353330776 37.0 35.0 37.0 35.0 37.0 5 35.3437267581596 37.0 35.0 37.0 33.0 37.0 6 35.35969170065684 37.0 35.0 37.0 33.0 37.0 7 35.348095245551264 37.0 35.0 37.0 33.0 37.0 8 35.64919989352791 37.0 35.0 37.0 35.0 37.0 9 36.48856403591867 39.0 37.0 39.0 33.0 39.0 10 36.227255290332174 38.0 35.0 39.0 32.0 39.0 11 36.45190945174701 38.0 35.0 39.0 32.0 39.0 12 36.06353095911002 37.0 35.0 39.0 32.0 39.0 13 35.82488863488683 37.0 35.0 39.0 31.0 39.0 14 36.88130318711688 39.0 35.0 40.0 31.0 41.0 15 36.9049071109267 38.0 35.0 40.0 32.0 41.0 16 36.95109721058771 38.0 35.0 40.0 32.0 41.0 17 36.936079556575045 38.0 35.0 40.0 32.0 41.0 18 36.811659868632226 38.0 35.0 40.0 31.0 41.0 19 36.89444583623652 38.0 35.0 40.0 32.0 41.0 20 36.84210423304862 38.0 35.0 40.0 31.0 41.0 21 36.81221571559425 38.0 35.0 40.0 31.0 41.0 22 36.81689735620396 38.0 35.0 40.0 31.0 41.0 23 36.742539124580176 38.0 35.0 40.0 31.0 41.0 24 36.438469307070214 38.0 35.0 40.0 31.0 41.0 25 36.498806103356216 38.0 35.0 40.0 31.0 41.0 26 36.404271018452555 38.0 35.0 40.0 31.0 41.0 27 36.30899219465604 38.0 35.0 40.0 30.0 41.0 28 36.2646849287185 38.0 35.0 40.0 30.0 41.0 29 36.06485207424863 38.0 35.0 40.0 30.0 41.0 30 36.059409079877554 38.0 35.0 40.0 30.0 41.0 31 35.93518902711124 38.0 35.0 40.0 30.0 41.0 32 35.94521384450377 38.0 35.0 40.0 30.0 41.0 33 35.88692820179593 38.0 35.0 40.0 30.0 41.0 34 35.787363093327485 38.0 34.0 40.0 30.0 41.0 35 35.76146140778029 38.0 34.0 40.0 30.0 41.0 36 35.499035096646914 38.0 34.0 40.0 29.0 41.0 37 35.455831695802964 38.0 34.0 40.0 29.0 41.0 38 35.312241159293215 37.0 34.0 40.0 28.0 41.0 39 35.28054222479704 37.0 34.0 40.0 28.0 41.0 40 35.10949597989556 37.0 34.0 40.0 27.0 41.0 41 35.141120540502456 37.0 34.0 40.0 27.0 41.0 42 35.12661763209194 37.0 34.0 40.0 28.0 41.0 43 35.03339191908121 37.0 34.0 40.0 27.0 41.0 44 34.89993776079791 37.0 34.0 40.0 27.0 41.0 45 34.66298254953693 36.0 33.0 40.0 26.0 41.0 46 34.57487884884877 36.0 33.0 40.0 26.0 41.0 47 34.461247289267455 36.0 33.0 40.0 26.0 41.0 48 34.454258100882306 36.0 33.0 40.0 26.0 41.0 49 34.287145843282474 36.0 33.0 39.0 26.0 41.0 50 34.04361832885785 35.0 33.0 39.0 24.0 41.0 51 32.19383401313678 35.0 30.0 38.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 11.0 11 5.0 12 15.0 13 27.0 14 38.0 15 62.0 16 98.0 17 190.0 18 364.0 19 598.0 20 979.0 21 1448.0 22 1946.0 23 2647.0 24 3269.0 25 4025.0 26 4746.0 27 6046.0 28 7792.0 29 9876.0 30 12688.0 31 16671.0 32 21792.0 33 31020.0 34 51963.0 35 56826.0 36 51478.0 37 69398.0 38 88422.0 39 66491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.143776471232965 33.16840597183187 20.30955195603329 26.37826560090188 2 25.04012275606147 30.59369935725302 19.90656290856709 24.45961497811842 3 21.07227576272381 31.194953535891273 20.642864412485416 27.089906288899503 4 21.15780573540119 31.574847533526967 19.87074600925368 27.396600721818164 5 18.81307101532102 35.27220843478192 18.26231279309184 27.652407756805207 6 20.76871286198555 36.56787987442556 20.658717794148732 22.004689469440162 7 82.86347302576468 7.2305120837998 5.127101062372292 4.778913828063225 8 85.23697869775233 5.082868170324035 4.254382187844958 5.425770944078664 9 78.3579811012033 9.684458988671683 7.457939608401901 4.499620301723126 10 44.01388051638966 29.713151652274668 11.301308197568364 14.971659633767311 11 35.76659907776377 26.135963298442842 20.50801280796662 17.589424815826764 12 33.5735479476721 25.154619401407626 24.809563699278964 16.462268951641317 13 25.569743136072905 33.05743230018868 21.570385100169887 19.80243946356854 14 19.888948040052295 33.087377576663826 27.164475898945454 19.859198484338425 15 18.14644610241676 28.583451418192634 31.30671009057957 21.963392388811034 16 20.130663180227508 26.193505202257832 31.795033389961873 21.880798227552788 17 20.18448638957826 26.543649644179656 26.00815764132996 27.263706324912125 18 25.062043481324324 25.66975644508467 25.99563151260833 23.272568560982677 19 25.79462629077842 28.43548652266838 23.63171615792317 22.138171028630033 20 29.839000101774797 28.385577728543133 21.770215997432143 20.005206172249927 21 23.9043551783799 29.979723329131865 23.565171099089508 22.55075039339873 22 24.391308432433277 27.305199126302522 23.203870573774985 25.099621867489212 23 24.329656392631506 30.236704688686554 21.347654873838398 24.085984044843542 24 20.32403529236767 28.351326595319925 28.308463748600598 23.016174363711805 25 21.431227638903025 27.01983825636288 26.50372260887946 25.045211495854637 26 24.91662295569665 29.80122599484863 22.545074491321742 22.73707655813298 27 21.15956722225267 29.082539359445093 25.02642230277219 24.731471115530052 28 20.65715202805853 29.84956902288367 28.852958906468963 20.64032004258884 29 22.313145389210305 29.005033937980006 26.89242404077255 21.78939663203714 30 22.24327307743496 27.69742353189857 26.453030931709108 23.606272458957356 31 27.729130295225197 29.376903384403402 20.39938778545873 22.49457853491267 32 27.091080613467156 26.200355428902476 23.43873548730555 23.269828470324818 33 23.401939984185763 28.216474990801128 23.97148739949739 24.410097625515725 34 21.174833441632153 27.376245762645517 26.157688302944422 25.291232492777905 35 22.863903611439486 26.368283842076835 27.7322618274056 23.035550719078078 36 25.928695012252117 29.51077638511583 23.683777880422443 20.876750722209607 37 23.093679785176892 31.28107067085248 20.499205373709223 25.1260441702614 38 22.930448670273147 32.029898303492445 22.306686604088217 22.732966422146195 39 22.647436449468813 27.834036623268847 23.964245731330198 25.554281195932138 40 24.993541214877908 27.353346433576288 22.688929250859214 24.964183100686586 41 21.529088019540758 25.559174214964024 26.12500293581142 26.786734829683795 42 26.62878817533449 24.225924389155505 23.185864263737642 25.959423171772368 43 23.192127328098454 24.753000399270352 25.65546882951156 26.399403443119635 44 23.994582449327893 25.40122756061472 24.051341470097782 26.552848519959603 45 24.62167176845451 28.055788245793963 23.282941761330274 24.039598224421255 46 21.02021404022453 27.83971252534584 26.749743605802728 24.390329828626903 47 22.359922651155145 28.259729279043004 24.224162902304023 25.15618516749783 48 23.019305895892213 23.81667227732849 29.034392052171327 24.12962977460797 49 23.944869375963926 24.70739746189317 27.212036043935395 24.13569711820751 50 21.34119608871631 27.325162643952623 24.89313646434359 26.44050480298748 51 21.246271519497704 26.169431548620953 27.372135626658732 25.212161305222615 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1877.0 1 1507.0 2 1137.0 3 805.0 4 473.0 5 413.5 6 354.0 7 402.5 8 451.0 9 507.0 10 563.0 11 598.0 12 633.0 13 733.5 14 834.0 15 907.0 16 980.0 17 1066.5 18 1153.0 19 1172.0 20 1191.0 21 1064.5 22 938.0 23 1287.0 24 1636.0 25 1471.0 26 2194.0 27 3082.0 28 3906.0 29 4730.0 30 5099.5 31 5469.0 32 7218.0 33 8967.0 34 9184.5 35 9402.0 36 10351.0 37 11300.0 38 13422.5 39 15545.0 40 18718.0 41 21891.0 42 26620.5 43 31350.0 44 35854.0 45 40358.0 46 43565.0 47 46772.0 48 47283.0 49 47794.0 50 45858.0 51 43922.0 52 41022.5 53 38123.0 54 35236.0 55 32349.0 56 30562.0 57 28775.0 58 26539.5 59 24304.0 60 22324.5 61 20345.0 62 18661.5 63 16978.0 64 15409.0 65 13840.0 66 11531.5 67 9223.0 68 8473.5 69 7724.0 70 6516.5 71 5309.0 72 4698.5 73 4088.0 74 3267.0 75 1938.5 76 1431.0 77 1156.5 78 882.0 79 730.5 80 579.0 81 377.0 82 175.0 83 135.0 84 95.0 85 82.5 86 70.0 87 58.0 88 46.0 89 33.0 90 20.0 91 17.5 92 15.0 93 9.5 94 4.0 95 2.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 510932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.03837817457592 #Duplication Level Percentage of deduplicated Percentage of total 1 78.82011389817134 20.52347933443733 2 9.081521847701639 4.7293620054225745 3 3.041647505753465 2.3759870408569292 4 1.3852239476390453 1.4427594002041766 5 0.7871845315170971 1.0248504262409277 6 0.48950817747974074 0.7647599426858951 7 0.3637369417552367 0.6629784031840583 8 0.2569781851588687 0.5353036134226253 9 0.217894528520296 0.5106258122204148 >10 3.61020951640362 24.22817946844322 >50 1.6431892941391912 30.35222463175299 >100 0.2967808738843075 10.373693712969818 >500 0.0022540319535517025 0.3811024111808619 >1k 0.0037567199225861715 2.094693796978177 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT 2992 0.5855965177362153 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC 2291 0.44839626408210875 No Hit AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT 1980 0.38752710732543666 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT 1854 0.36286629140472704 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1590 0.31119601042800216 No Hit AAACTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT 734 0.14365903877619723 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 632 0.12369552112609897 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 582 0.11390948306232532 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.914415225509461E-4 0.0 0.0 0.7946262907784206 0.0 2 3.914415225509461E-4 0.0 0.0 0.9856497537832823 0.0 3 3.914415225509461E-4 0.0 0.0 1.2735549936195032 0.0 4 3.914415225509461E-4 0.0 0.0 2.7929352634010005 0.0 5 3.914415225509461E-4 0.0 0.0 2.994527647514738 0.0 6 3.914415225509461E-4 0.0 0.0 3.9829174919558765 0.0 7 3.914415225509461E-4 0.0 0.0 4.720197599680584 0.0 8 3.914415225509461E-4 0.0 0.0 5.14275872327433 0.0 9 3.914415225509461E-4 0.0 0.0 6.195344977413824 0.0 10 3.914415225509461E-4 0.0 0.0 7.217007351271794 0.0 11 3.914415225509461E-4 0.0 0.0 8.790602271926597 0.0 12 3.914415225509461E-4 0.0 0.0 9.319831210415476 0.0 13 3.914415225509461E-4 0.0 0.0 9.57563824540252 0.0 14 3.914415225509461E-4 0.0 0.0 9.874308127108891 0.0 15 3.914415225509461E-4 0.0 0.0 10.094689704305074 0.0 16 3.914415225509461E-4 0.0 0.0 10.515880782569893 0.0 17 3.914415225509461E-4 0.0 0.0 11.034932241472447 0.0 18 3.914415225509461E-4 0.0 0.0 11.64479813360682 0.0 19 3.914415225509461E-4 0.0 0.0 11.942489411506815 0.0 20 3.914415225509461E-4 0.0 0.0 12.206320997706152 0.0 21 3.914415225509461E-4 0.0 0.0 12.539633454158283 0.0 22 3.914415225509461E-4 0.0 0.0 12.883906273241841 0.0 23 3.914415225509461E-4 0.0 0.0 13.235812202015142 0.0 24 3.914415225509461E-4 0.0 0.0 13.49357644461494 0.0 25 3.914415225509461E-4 0.0 0.0 13.714740904856223 0.0 26 3.914415225509461E-4 0.0 0.0 13.92885941769159 0.0 27 3.914415225509461E-4 0.0 0.0 14.144935138139713 0.0 28 3.914415225509461E-4 0.0 0.0 14.352594865852991 0.0 29 3.914415225509461E-4 0.0 0.0 14.580609552738917 0.0 30 3.914415225509461E-4 0.0 0.0 14.917053541371455 0.0 31 3.914415225509461E-4 0.0 0.0 15.166793232758959 0.0 32 3.914415225509461E-4 0.0 0.0 15.404593957708657 0.0 33 3.914415225509461E-4 0.0 0.0 15.654920811379988 0.0 34 3.914415225509461E-4 0.0 0.0 15.88352266054974 0.0 35 3.914415225509461E-4 0.0 0.0 16.16242474536729 0.0 36 3.914415225509461E-4 0.0 0.0 16.388677945401735 0.0 37 3.914415225509461E-4 0.0 0.0 16.616105470003838 0.0 38 3.914415225509461E-4 0.0 0.0 16.85116610429568 0.0 39 3.914415225509461E-4 0.0 0.0 17.091706919903235 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGCG 60 0.0 45.000004 1 CGGGTAC 30 2.1631258E-6 45.000004 6 TCGTTCG 40 6.8030204E-9 45.000004 45 CGACGTC 20 7.029602E-4 45.000004 1 CGACGAT 20 7.029602E-4 45.000004 34 GCGAAGT 20 7.029602E-4 45.000004 17 GCGCGAC 30 2.1631258E-6 45.000004 9 GACGTGC 20 7.029602E-4 45.000004 39 GACGTAA 20 7.029602E-4 45.000004 42 CGCATAG 40 6.8030204E-9 45.000004 1 TGAACGT 20 7.029602E-4 45.000004 21 TGTATCG 35 1.2101555E-7 45.000004 35 CGTCTAT 20 7.029602E-4 45.000004 39 CTAAGCG 30 2.1631258E-6 45.000004 1 TGACGTA 20 7.029602E-4 45.000004 41 TACGGGT 60 0.0 45.000004 4 CACGAAC 20 7.029602E-4 45.000004 41 CGCGACG 65 0.0 45.000004 1 ACGGGTA 65 0.0 45.000004 5 ACCCTCG 20 7.029602E-4 45.000004 14 >>END_MODULE