##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552969_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 545391 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.501601603253444 31.0 31.0 34.0 30.0 34.0 2 31.68235999493941 31.0 31.0 34.0 30.0 34.0 3 31.873078213611887 31.0 31.0 34.0 30.0 34.0 4 35.703663976853306 37.0 35.0 37.0 35.0 37.0 5 35.31708810743118 37.0 35.0 37.0 33.0 37.0 6 35.34666138605147 37.0 35.0 37.0 33.0 37.0 7 35.34005878351495 37.0 35.0 37.0 33.0 37.0 8 35.63848688372195 37.0 35.0 37.0 35.0 37.0 9 36.47631332383556 39.0 37.0 39.0 33.0 39.0 10 36.179891123982614 38.0 35.0 39.0 31.0 39.0 11 36.40197583018421 38.0 35.0 39.0 32.0 39.0 12 36.05055822336636 37.0 35.0 39.0 32.0 39.0 13 35.77690317588666 37.0 35.0 39.0 31.0 39.0 14 36.8396838231654 39.0 35.0 40.0 31.0 41.0 15 36.87598621906119 38.0 35.0 40.0 32.0 41.0 16 36.94507793491275 38.0 35.0 40.0 32.0 41.0 17 36.91087678381198 38.0 35.0 40.0 32.0 41.0 18 36.79838867894777 38.0 35.0 40.0 32.0 41.0 19 36.8276062494614 38.0 35.0 40.0 32.0 41.0 20 36.77420236124175 38.0 35.0 40.0 31.0 41.0 21 36.77024740048882 38.0 35.0 40.0 31.0 41.0 22 36.75666081765192 38.0 35.0 40.0 31.0 41.0 23 36.699600836830825 38.0 35.0 40.0 31.0 41.0 24 36.3371929496453 38.0 35.0 40.0 31.0 41.0 25 36.4512157332996 38.0 35.0 40.0 31.0 41.0 26 36.367054095135416 38.0 35.0 40.0 31.0 41.0 27 36.27405476071296 38.0 35.0 40.0 30.0 41.0 28 36.246315029034214 38.0 35.0 40.0 30.0 41.0 29 36.01295584268901 38.0 35.0 40.0 30.0 41.0 30 35.95630290928893 38.0 35.0 40.0 30.0 41.0 31 35.80260033627251 38.0 34.0 40.0 30.0 41.0 32 35.75596590336107 38.0 34.0 40.0 30.0 41.0 33 35.770351912664495 38.0 34.0 40.0 30.0 41.0 34 35.62225999328922 38.0 34.0 40.0 29.0 41.0 35 35.555661901278164 38.0 34.0 40.0 29.0 41.0 36 35.290835382322044 37.0 34.0 40.0 28.0 41.0 37 35.10925372805932 37.0 34.0 40.0 27.0 41.0 38 35.096316220839725 37.0 34.0 40.0 27.0 41.0 39 35.03227592681214 37.0 34.0 40.0 27.0 41.0 40 34.87392531229888 37.0 34.0 40.0 26.0 41.0 41 34.80512696395797 37.0 34.0 40.0 26.0 41.0 42 34.755667035209605 37.0 33.0 40.0 26.0 41.0 43 34.64228415943791 37.0 33.0 40.0 26.0 41.0 44 34.51709507490956 36.0 33.0 40.0 25.0 41.0 45 34.26293613205939 36.0 33.0 40.0 24.0 41.0 46 34.16309583399799 36.0 33.0 39.0 24.0 41.0 47 34.024565861922916 35.0 33.0 39.0 24.0 41.0 48 33.96572550702157 35.0 33.0 39.0 23.0 41.0 49 33.777964799565815 35.0 33.0 39.0 23.0 40.0 50 33.55890727936471 35.0 33.0 39.0 23.0 40.0 51 31.638015662157976 34.0 29.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 3.0 10 10.0 11 14.0 12 11.0 13 13.0 14 31.0 15 46.0 16 74.0 17 220.0 18 423.0 19 719.0 20 1145.0 21 1780.0 22 2363.0 23 3268.0 24 4087.0 25 4772.0 26 5703.0 27 7133.0 28 8833.0 29 11249.0 30 14277.0 31 18237.0 32 23902.0 33 33606.0 34 56201.0 35 60910.0 36 55239.0 37 74249.0 38 92622.0 39 64248.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.657839971690034 32.505486889222595 20.266010990280368 26.570662148807 2 24.082905658509215 31.86924610050404 20.059736959355764 23.988111281630978 3 20.813508107027804 31.619883716452968 20.552777731939102 27.01383044458013 4 21.538125858329163 32.00547863826136 19.628670073396883 26.827725430012595 5 16.9153873092882 36.07026885298804 18.374340610681145 28.640003227042616 6 21.88686648661236 37.64125187250981 19.231890515245027 21.239991125632805 7 80.84731871263003 7.633239272375232 6.276047826238424 5.243394188756324 8 83.60038944537038 5.832146111688679 4.930957789915859 5.636506653025077 9 76.12300166302708 10.35440628833259 8.867583073428055 4.655008975212279 10 43.88447920849446 29.207669360147126 11.831144995058592 15.076706436299828 11 35.94302069524433 25.61391735470516 21.200386511695278 17.242675438355235 12 32.483117616535665 24.484635793403264 25.19220155814819 17.840045031912886 13 24.51800634773951 32.88943161878359 22.449031978892208 20.143530054584694 14 19.122977826916838 33.529889565467705 28.090122499271164 19.25701010834429 15 17.08242343566359 28.418877465891445 32.28582796562466 22.212871132820307 16 19.33640269091349 25.631886114732367 31.566160791065496 23.46555040328865 17 18.408077874405702 26.273810898969728 28.091589336824406 27.22652188980016 18 23.954190663212263 25.713295598937275 26.01858116470569 24.313932573144772 19 24.779286786910674 29.78376980918277 23.982060576723853 21.4548828271827 20 27.496603354290777 28.079487927010167 22.853879143586894 21.57002957511217 21 22.75541767282555 30.257008274797347 24.31429928253308 22.67327476984402 22 22.672541351067398 27.37595596553665 23.69181009587617 26.25969258751978 23 23.428696109763454 29.56411088558484 21.20827076354395 25.798922241107757 24 19.645171995870854 29.226188184256802 27.48083485059343 23.647804969278923 25 20.985494810145383 27.462132671789597 26.820391242246387 24.731981275818633 26 24.10839196099679 30.810006032369436 22.67749192780959 22.404110078824182 27 21.370172958482996 29.415043519236654 24.355370734023847 24.8594127882565 28 21.907952276440206 27.95682363662033 29.272943631266372 20.862280455673083 29 22.751933933636604 28.100940426226323 27.06498640424943 22.08213923588765 30 24.08895636341634 29.259192029204733 24.763334928519175 21.888516678859755 31 29.604265563604827 28.244873861138153 20.669941381504277 21.48091919375274 32 28.35580345110205 28.09140598213025 22.121193785742705 21.43159678102499 33 27.849377785845387 26.18745083802263 23.433463331811488 22.529708044320497 34 23.524957324194936 27.959023892950196 23.98261064080632 24.53340814204855 35 25.45623231773168 27.42344483132285 26.379423202803125 20.740899648142342 36 29.640753147741712 28.14036168546969 23.91385263049812 18.305032536290476 37 24.68614260227983 32.14262794948945 21.205520443131626 21.965709005099093 38 26.46193281517297 29.419810741284692 22.93840565759244 21.179850785949895 39 25.930754266205348 27.236973107367007 23.25872630828158 23.573546318146064 40 27.23972342777934 27.16509806725817 21.489903573766345 24.105274931196153 41 21.543443144459662 25.29322999462771 27.58241335115541 25.58091350975722 42 26.27289412549895 26.359437541140206 22.932354952685323 24.435313380675517 43 24.066953800117712 25.286445870943965 25.365288389430702 25.281311939507617 44 24.617201237277474 24.327500820512256 24.097390679347477 26.95790726286279 45 25.337601830613266 27.91758573207112 23.937872095432454 22.806940341883163 46 23.41274425137195 26.267210129980146 27.72451323912569 22.595532379522215 47 23.541825956057213 26.263176326708727 25.194218459783897 25.000779257450162 48 23.940072351762314 23.75671765760711 29.88039773300256 22.422812257628014 49 24.099774290371496 23.565662066297392 27.785570352279375 24.54899329105174 50 22.524574112884153 26.14692945061433 25.140128825008112 26.18836761149341 51 22.282912625987596 25.409476870722102 27.375772610842496 24.931837892447803 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3365.0 1 2646.5 2 1928.0 3 1357.0 4 786.0 5 718.0 6 650.0 7 666.0 8 682.0 9 741.0 10 800.0 11 794.0 12 788.0 13 893.0 14 998.0 15 1005.0 16 1012.0 17 1027.5 18 1043.0 19 1160.5 20 1278.0 21 1289.5 22 1301.0 23 1820.5 24 2340.0 25 2072.0 26 2185.5 27 2567.0 28 3406.5 29 4246.0 30 5059.5 31 5873.0 32 7062.5 33 8252.0 34 8559.0 35 8866.0 36 9744.5 37 10623.0 38 12414.5 39 14206.0 40 17135.0 41 20064.0 42 26176.5 43 32289.0 44 41336.5 45 50384.0 46 50763.5 47 51143.0 48 51428.0 49 51713.0 50 49084.5 51 46456.0 52 43407.0 53 40358.0 54 37542.5 55 34727.0 56 31190.5 57 27654.0 58 26097.5 59 24541.0 60 23877.5 61 23214.0 62 20905.0 63 18596.0 64 16284.5 65 13973.0 66 12859.5 67 11746.0 68 10238.5 69 8731.0 70 7184.5 71 5638.0 72 5013.5 73 4389.0 74 3360.5 75 2125.0 76 1918.0 77 1466.0 78 1014.0 79 745.0 80 476.0 81 405.0 82 334.0 83 249.5 84 165.0 85 118.5 86 72.0 87 49.5 88 27.0 89 22.0 90 17.0 91 11.5 92 6.0 93 5.0 94 4.0 95 3.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 545391.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.112236648539543 #Duplication Level Percentage of deduplicated Percentage of total 1 78.32574639324143 21.235861718870545 2 9.706104831710752 5.2630842226575005 3 3.3520719762554068 2.726465060495227 4 1.5715727982613237 1.7043541446747401 5 0.8725368717123615 1.1828213075220966 6 0.5456362790893484 0.8876051953619389 7 0.35100322004887746 0.6661537656455196 8 0.288532168723274 0.6258201951313395 9 0.2492555295293291 0.6082087412300587 >10 2.899262244926606 19.93727855455048 >50 1.45468410607048 28.689023305527332 >100 0.3754894907034294 13.207002910474433 >500 0.003376704053088394 0.5939763959736457 >1k 0.004727385674323751 2.672344481885129 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT 4400 0.8067606542828907 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2865 0.5253111987546549 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCC 1731 0.3173869755826554 No Hit AATCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT 1579 0.2895170620710646 No Hit AAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCT 1506 0.27613216939773483 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGT 1501 0.2752153959269588 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTT 1013 0.18573830517922005 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 944 0.1730868312825111 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 702 0.1287149952969521 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 563 0.10322869280937896 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8335469415520241E-4 0.0 0.0 1.1279980784428052 0.0 2 1.8335469415520241E-4 0.0 0.0 1.410364307441817 0.0 3 1.8335469415520241E-4 0.0 0.0 1.7662557687970648 0.0 4 1.8335469415520241E-4 0.0 0.0 3.689463155790983 0.0 5 1.8335469415520241E-4 0.0 0.0 3.971279320707529 0.0 6 1.8335469415520241E-4 0.0 0.0 5.29895066108535 0.0 7 1.8335469415520241E-4 0.0 0.0 6.32316998263631 0.0 8 1.8335469415520241E-4 0.0 0.0 6.821894750738461 0.0 9 1.8335469415520241E-4 0.0 0.0 8.00783291253431 0.0 10 1.8335469415520241E-4 0.0 0.0 9.210823060886593 0.0 11 1.8335469415520241E-4 0.0 0.0 10.903553597327422 0.0 12 3.6670938831040483E-4 0.0 0.0 11.600668144505502 0.0 13 3.6670938831040483E-4 0.0 0.0 11.932723495620573 0.0 14 3.6670938831040483E-4 0.0 0.0 12.291915341470615 0.0 15 3.6670938831040483E-4 0.0 0.0 12.569514348421592 0.0 16 3.6670938831040483E-4 0.0 0.0 13.100692897389212 0.0 17 3.6670938831040483E-4 0.0 0.0 13.754535736746664 0.0 18 3.6670938831040483E-4 0.0 0.0 14.547361434273759 0.0 19 3.6670938831040483E-4 0.0 0.0 14.899219092357592 0.0 20 3.6670938831040483E-4 0.0 0.0 15.230541024696043 0.0 21 3.6670938831040483E-4 0.0 0.0 15.638138509803058 0.0 22 3.6670938831040483E-4 0.0 0.0 16.046836123075003 0.0 23 3.6670938831040483E-4 0.0 0.0 16.495688414366942 0.0 24 3.6670938831040483E-4 0.0 0.0 16.807758103819094 0.0 25 3.6670938831040483E-4 0.0 0.0 17.06738835074286 0.0 26 3.6670938831040483E-4 0.0 0.0 17.311433448663436 0.0 27 3.6670938831040483E-4 0.0 0.0 17.567579956398255 0.0 28 3.6670938831040483E-4 0.0 0.0 17.821709562497364 0.0 29 3.6670938831040483E-4 0.0 0.0 18.09509141148277 0.0 30 3.6670938831040483E-4 0.0 0.0 18.479769559820387 0.0 31 3.6670938831040483E-4 0.0 0.0 18.755351665135656 0.0 32 3.6670938831040483E-4 0.0 0.0 18.995729669173127 0.0 33 3.6670938831040483E-4 0.0 0.0 19.27607899653643 0.0 34 3.6670938831040483E-4 0.0 0.0 19.526541508752437 0.0 35 3.6670938831040483E-4 0.0 0.0 19.82339275858971 0.0 36 3.6670938831040483E-4 0.0 0.0 20.06065373282654 0.0 37 3.6670938831040483E-4 0.0 0.0 20.311849663819167 0.0 38 3.6670938831040483E-4 0.0 0.0 20.57478029523773 0.0 39 3.6670938831040483E-4 0.0 0.0 20.845961887893274 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATAC 25 3.8880993E-5 45.000004 27 CGAGTTT 25 3.8880993E-5 45.000004 42 ATACTAG 25 3.8880993E-5 45.000004 1 CCATCGC 25 3.8880993E-5 45.000004 34 CGCTACG 25 3.8880993E-5 45.000004 1 TCTAACG 25 3.8880993E-5 45.000004 1 ACAATAC 25 3.8880993E-5 45.000004 21 ACTAACG 25 3.8880993E-5 45.000004 1 CATACCC 25 3.8880993E-5 45.000004 15 GCGATAG 25 3.8880993E-5 45.000004 1 ACAGACG 50 2.1827873E-11 45.000004 1 CGACTAA 25 3.8880993E-5 45.000004 30 GCGTAAC 25 3.8880993E-5 45.000004 17 GTCGGCC 25 3.8880993E-5 45.000004 8 CGAAGTA 25 3.8880993E-5 45.000004 35 TACCGGA 25 3.8880993E-5 45.000004 45 CTTACCG 25 3.8880993E-5 45.000004 1 ACGCGTA 25 3.8880993E-5 45.000004 23 CGGACTA 25 3.8880993E-5 45.000004 6 TTAATGT 20 7.030022E-4 45.0 31 >>END_MODULE