SRR3552966_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552966_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	440218
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCC	3980	0.9040975153219541	No Hit
CTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGCT	3661	0.8316334179883602	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGT	3160	0.7178261679440641	No Hit
AATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCT	3124	0.7096484014738152	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2601	0.5908436274754781	No Hit
AAACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCT	877	0.1992194776224507	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	812	0.18445406594005698	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	778	0.1767306198292664	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	709	0.16105656742795615	No Hit
AATGACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTT	685	0.15560472311445692	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTT	620	0.1408393114320632	No Hit
CCGCAGAGAGGACAGGCAGAATTTGAAACCTAAAGAACTCCCAGATTTCAG	559	0.126982540468586	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCT	531	0.12062205543617026	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	482	0.1094912066294427	No Hit
AACTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTG	460	0.10449368267540173	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	443	0.10063195962000644	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCAAG	30	2.1624382E-6	45.000004	1
ATCAAGT	30	2.1624382E-6	45.000004	45
CTACGAA	30	2.1624382E-6	45.000004	10
TATTCCG	30	2.1624382E-6	45.000004	1
GCTACGA	30	2.1624382E-6	45.000004	9
TAGTACG	30	2.1624382E-6	45.000004	1
AGGTATA	20	7.0285384E-4	45.0	11
AATCCGG	80	0.0	45.0	2
TCGTTGC	20	7.0285384E-4	45.0	39
ACACGTT	20	7.0285384E-4	45.0	33
CTCCGTG	20	7.0285384E-4	45.0	43
CGAGTTT	25	3.8868704E-5	45.0	28
CGAGTAG	25	3.8868704E-5	45.0	1
CGAAACG	20	7.0285384E-4	45.0	1
CCGATAT	20	7.0285384E-4	45.0	19
CGCATAG	25	3.8868704E-5	45.0	1
TAGCGCG	20	7.0285384E-4	45.0	1
ATTACCG	25	3.8868704E-5	45.0	1
ATTACAC	20	7.0285384E-4	45.0	18
TTGTCGT	20	7.0285384E-4	45.0	43