SRR3552960_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552960_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	653355
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGCT	5133	0.7856372110108593	Illumina PCR Primer Index 11 (96% over 25bp)
AATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCT	4652	0.7120172035111081	Illumina PCR Primer Index 11 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCC	4546	0.6957932517544061	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGT	4205	0.6436011050653933	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2794	0.4276388793228796	No Hit
AAACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCT	1556	0.2381553672964927	Illumina PCR Primer Index 11 (95% over 22bp)
AAAAACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTT	1333	0.20402384614795938	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTT	1046	0.1600967314859456	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCT	898	0.13744442148602215	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	835	0.12780188412118987	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCT	736	0.11264932540502484	No Hit
AACTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTG	681	0.1042312372293776	Illumina PCR Primer Index 11 (95% over 23bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	671	0.10270067574289629	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCTA	20	7.0310483E-4	45.000004	34
TCGTTAA	20	7.0310483E-4	45.000004	21
TCTTGCG	30	2.1640572E-6	45.000004	1
CAAACGA	20	7.0310483E-4	45.000004	45
CGAACAG	30	2.1640572E-6	45.000004	1
TTGGACG	20	7.0310483E-4	45.000004	36
GATCGAC	20	7.0310483E-4	45.000004	25
GCGCGAT	20	7.0310483E-4	45.000004	24
TAGAACG	30	2.1640572E-6	45.000004	1
GGGTACG	75	0.0	45.000004	7
GGCCGAT	120	0.0	45.000004	8
GTCTCCG	30	2.1640572E-6	45.000004	32
GTCTATC	20	7.0310483E-4	45.000004	12
AAGCGTC	20	7.0310483E-4	45.000004	10
TAACGCG	30	2.1640572E-6	45.000004	1
CGACACG	20	7.0310483E-4	45.000004	1
TGCGGAT	30	2.1640572E-6	45.000004	12
TCCTAGT	20	7.0310483E-4	45.000004	30
TAGCACG	20	7.0310483E-4	45.000004	1
ATTCCCG	40	6.8066583E-9	45.000004	18