SRR3552958_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552958_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1072442
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	5690	0.5305648230860037	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2046	0.19077954798487937	No Hit
AAACTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	1389	0.1295174937199401	No Hit
AATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCT	1282	0.11954026418211894	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC	1170	0.10909680896496034	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGT	1128	0.10518051325852586	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACC	20	7.0330745E-4	45.000004	30
CGGCATA	20	7.0330745E-4	45.000004	30
TAAGTCG	20	7.0330745E-4	45.000004	15
TCGATAT	20	7.0330745E-4	45.000004	43
TTATCCG	20	7.0330745E-4	45.000004	1
CGTAGTA	20	7.0330745E-4	45.000004	6
TACGATA	20	7.0330745E-4	45.000004	23
ACCGTTG	20	7.0330745E-4	45.000004	27
ACGTAGT	20	7.0330745E-4	45.000004	5
CGATCAA	20	7.0330745E-4	45.000004	43
TTCGACA	20	7.0330745E-4	45.000004	36
TATCGCG	40	6.8139343E-9	45.000004	1
AAAGCGT	20	7.0330745E-4	45.000004	38
TGTCCGA	20	7.0330745E-4	45.000004	35
AGCCGTA	25	3.8906303E-5	45.0	32
ATCTACG	50	2.1827873E-11	45.0	1
CTATACG	25	3.8906303E-5	45.0	1
GCTATCG	35	1.211829E-7	45.0	9
CGCGCCA	25	3.8906303E-5	45.0	25
TAACGGT	25	3.8906303E-5	45.0	28