SRR3552957_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552957_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1633092
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	6652	0.40732549054186784	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	2186	0.1338565126765669	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1860	0.11389437949607248	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1718	0.10519921719045836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGAC	30	2.1660653E-6	45.000004	39
TATTACG	30	2.1660653E-6	45.000004	1
TATAGCG	30	2.1660653E-6	45.000004	1
CTATGCG	40	6.8175723E-9	45.0	1
GTATTCG	20	7.03416E-4	45.0	44
ATTACCG	45	3.8562575E-10	45.0	1
CGATTGT	35	1.2123564E-7	45.0	34
ATATGCG	35	1.2123564E-7	45.0	41
TCTAGCG	105	0.0	45.0	1
ACGATAG	70	0.0	45.0	1
GTTCGAA	20	7.03416E-4	45.0	9
TACGAAC	20	7.03416E-4	45.0	11
TGTTACG	20	7.03416E-4	45.0	1
CATACCG	70	0.0	45.0	1
CGTAAAA	25	3.8915292E-5	45.0	41
TATACGT	20	7.03416E-4	45.0	42
TCGAATC	20	7.03416E-4	45.0	11
TCGGTAA	20	7.03416E-4	45.0	37
AAATGCG	50	2.1827873E-11	45.0	1
GTAACGG	300	0.0	44.25	2