SRR3552953_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552953_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	664272
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCC	8460	1.2735746802514631	No Hit
AATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	7867	1.1843040200399837	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGT	7253	1.0918720042392274	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	6427	0.9675253510610111	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2351	0.35392128525664185	No Hit
AATGACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT	1666	0.2508008767492834	No Hit
AAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	1515	0.22806922465496063	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCT	1333	0.20067080954789604	No Hit
AACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG	1169	0.17598212780306863	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1131	0.1702615795939013	No Hit
AATGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	980	0.1475299274995785	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT	888	0.13368017920369968	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	7.0311327E-4	45.000004	1
AGCGTTC	20	7.0311327E-4	45.000004	36
ACTATCG	20	7.0311327E-4	45.000004	12
GTCGACT	20	7.0311327E-4	45.000004	11
TACCAGT	20	7.0311327E-4	45.000004	43
ACGCATT	20	7.0311327E-4	45.000004	23
ACGCATC	20	7.0311327E-4	45.000004	11
CGACGAA	20	7.0311327E-4	45.000004	18
GCGCGTT	20	7.0311327E-4	45.000004	41
CGGTTGC	20	7.0311327E-4	45.000004	38
TAGAACG	20	7.0311327E-4	45.000004	1
GAATCTA	20	7.0311327E-4	45.000004	9
CCAATAC	20	7.0311327E-4	45.000004	31
CACGCAT	20	7.0311327E-4	45.000004	32
CAACCCA	20	7.0311327E-4	45.000004	24
ATGCTAT	20	7.0311327E-4	45.000004	10
CGTCTAA	20	7.0311327E-4	45.000004	1
CACGATT	20	7.0311327E-4	45.000004	16
TTCCGAA	20	7.0311327E-4	45.000004	33
TAACGCG	20	7.0311327E-4	45.000004	1