SRR3552952_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552952_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681967
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCC	8075	1.1840748892541721	No Hit
AATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	7195	1.0550363873911788	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGT	6978	1.0232166659090542	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	6222	0.9123608620358462	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2451	0.35940155462067813	No Hit
AATGACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT	1534	0.22493757029299072	No Hit
AAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	1340	0.196490446018649	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCT	1228	0.18006736396335893	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1129	0.1655505325037722	No Hit
AACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG	1075	0.15763226079854303	No Hit
AATGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	923	0.1353437922949351	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT	919	0.1347572536501033	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACCC	30	2.1641972E-6	45.000004	23
GTCGACA	30	2.1641972E-6	45.000004	26
ACGCATT	30	2.1641972E-6	45.000004	23
AACCCGC	30	2.1641972E-6	45.000004	45
TAAACGG	90	0.0	45.000004	2
ACCGAAC	30	2.1641972E-6	45.000004	21
CGATTTA	30	2.1641972E-6	45.000004	22
ATCACCC	30	2.1641972E-6	45.000004	45
ATCGTAG	30	2.1641972E-6	45.000004	1
ATATCAT	30	2.1641972E-6	45.000004	37
GTCACTA	30	2.1641972E-6	45.000004	42
ACTAACT	30	2.1641972E-6	45.000004	17
TCACTCG	30	2.1641972E-6	45.000004	18
CAATGCG	30	2.1641972E-6	45.000004	1
CGCGTCA	30	2.1641972E-6	45.000004	39
GCTAACG	30	2.1641972E-6	45.000004	1
GTTATCG	30	2.1641972E-6	45.000004	2
TACGTTC	30	2.1641972E-6	45.000004	2
TAGTAGT	30	2.1641972E-6	45.000004	32
GCTCACG	45	3.8380676E-10	45.000004	1