SRR3552944_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552944_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	877067
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCC	11833	1.349155765751077	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGT	10895	1.2422084059712657	No Hit
AATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT	9917	1.1307003911901827	No Hit
CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT	8641	0.9852154966496287	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2844	0.3242625705903882	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT	2409	0.27466544745156296	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCT	1787	0.20374726218179454	No Hit
AAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT	1734	0.1977043943051101	TruSeq Adapter, Index 23 (95% over 22bp)
AACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	1356	0.15460620454309648	TruSeq Adapter, Index 23 (95% over 23bp)
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTAT	1178	0.13431128978743928	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT	1138	0.129750634786168	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1101	0.12553202890999204	No Hit
CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	914	0.10421096677904881	TruSeq Adapter, Index 23 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGC	20	7.032371E-4	45.000004	41
GTATTAC	20	7.032371E-4	45.000004	43
AGATACG	35	1.2114833E-7	45.000004	1
CCGATAG	60	0.0	45.000004	1
ATTACGA	30	2.1649103E-6	45.000004	31
TTCACGT	35	1.2114833E-7	45.000004	29
CCTAATA	30	2.1649103E-6	45.000004	22
TCTAGCG	30	2.1649103E-6	45.000004	1
TCAATCG	20	7.032371E-4	45.000004	42
CTAACCG	20	7.032371E-4	45.000004	1
GTATGCG	35	1.2114833E-7	45.000004	1
TATTCGG	20	7.032371E-4	45.000004	39
TATTCGA	20	7.032371E-4	45.000004	38
GGTATAC	20	7.032371E-4	45.000004	30
TATTACG	20	7.032371E-4	45.000004	42
TGTTACG	35	1.2114833E-7	45.000004	1
CGAATAA	20	7.032371E-4	45.000004	22
TTAAACG	35	1.2114833E-7	45.000004	1
CGTCGGA	20	7.032371E-4	45.000004	24
GGCATAC	40	6.8121153E-9	45.000004	8