SRR3552938_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552938_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	476527
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT	6641	1.393625125124075	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	5656	1.186921202785991	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGT	4711	0.9886113483601139	No Hit
AATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	4499	0.9441227884254197	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4016	0.842764418385527	No Hit
AAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT	1757	0.36870943304366804	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	1193	0.2503530754815572	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1065	0.22349205816249657	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT	1061	0.22265265137127593	No Hit
AATGACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT	1047	0.21971472760200367	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCT	919	0.19285371028294304	No Hit
AACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG	843	0.1769049812497508	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	796	0.16704195145290823	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC	776	0.16284491749680502	No Hit
TCAAGAGGTTTCAGCATTCCCAATTATCAAAAAACAGAAAAACAAACAAAA	737	0.15466070128240372	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTACGCATCGTAT	665	0.13955137904043213	No Hit
CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC	544	0.11415932360600764	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCT	543	0.11394947190820248	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTGT	20	7.0291234E-4	45.000004	22
CTTCGTT	20	7.0291234E-4	45.000004	23
TCGCCGG	20	7.0291234E-4	45.000004	21
TTTAGCA	20	7.0291234E-4	45.000004	24
AGACTTC	35	1.209919E-7	45.000004	23
CAGGTCG	20	7.0291234E-4	45.000004	1
TCGTTTA	20	7.0291234E-4	45.000004	9
AGCAAGT	20	7.0291234E-4	45.000004	3
CGGAACG	40	6.8012014E-9	45.000004	1
GTCGCTC	20	7.0291234E-4	45.000004	17
TCGTTGT	20	7.0291234E-4	45.000004	25
TTGGCAA	55	1.8189894E-12	45.000004	30
ATCTCCC	20	7.0291234E-4	45.000004	11
GCCCAAC	20	7.0291234E-4	45.000004	40
ACCGGGA	160	0.0	45.000004	4
TCCGCTA	20	7.0291234E-4	45.000004	40
AATCATA	20	7.0291234E-4	45.000004	12
CATATGG	35	1.209919E-7	45.000004	2
TCCGCGC	20	7.0291234E-4	45.000004	39
GTATTGA	20	7.0291234E-4	45.000004	9