##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552938_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 476527 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.013289908022 31.0 31.0 34.0 28.0 34.0 2 31.225840298660938 31.0 31.0 34.0 28.0 34.0 3 31.24942343246028 31.0 31.0 34.0 28.0 34.0 4 35.273547983639965 37.0 35.0 37.0 33.0 37.0 5 34.866958220625484 35.0 35.0 37.0 32.0 37.0 6 34.918839855873856 35.0 35.0 37.0 32.0 37.0 7 34.678679277354696 35.0 35.0 37.0 32.0 37.0 8 35.14742501474208 37.0 35.0 37.0 32.0 37.0 9 35.61552650741721 39.0 35.0 39.0 31.0 39.0 10 35.582795938110536 37.0 35.0 39.0 30.0 39.0 11 35.92659597462473 37.0 35.0 39.0 31.0 39.0 12 35.28452322743517 37.0 35.0 39.0 30.0 39.0 13 34.71117061572587 37.0 33.0 39.0 27.0 39.0 14 35.58988892549635 38.0 33.0 40.0 27.0 41.0 15 35.88530765308157 38.0 34.0 40.0 30.0 41.0 16 36.02118452889343 37.0 34.0 40.0 31.0 41.0 17 36.03558874943078 37.0 34.0 40.0 31.0 41.0 18 35.84510426481605 37.0 34.0 40.0 30.0 41.0 19 35.77043273518604 37.0 34.0 40.0 30.0 41.0 20 35.667941165978 37.0 34.0 40.0 30.0 41.0 21 35.629454364600534 37.0 34.0 40.0 30.0 41.0 22 35.638971139096 37.0 34.0 40.0 30.0 41.0 23 35.544086693933394 37.0 34.0 40.0 30.0 41.0 24 35.13662184933907 36.0 34.0 40.0 27.0 41.0 25 35.305739234083276 36.0 34.0 40.0 29.0 41.0 26 35.09485716444189 36.0 34.0 40.0 28.0 41.0 27 35.006490713013115 36.0 34.0 40.0 27.0 41.0 28 34.878678437947904 36.0 33.0 40.0 27.0 41.0 29 34.74985677621625 36.0 33.0 40.0 27.0 41.0 30 34.676574464825705 36.0 33.0 40.0 26.0 41.0 31 34.449642937336186 36.0 33.0 39.0 25.0 41.0 32 34.31193825323644 36.0 33.0 39.0 25.0 41.0 33 34.18315226629341 35.0 33.0 39.0 25.0 41.0 34 34.19747044763466 36.0 33.0 39.0 24.0 41.0 35 33.99539585375015 35.0 33.0 40.0 23.0 41.0 36 33.860440226891654 35.0 33.0 39.0 23.0 41.0 37 33.577927378721455 35.0 33.0 39.0 22.0 41.0 38 33.47272872261173 35.0 32.0 39.0 22.0 41.0 39 33.49423222608583 35.0 33.0 39.0 22.0 40.0 40 33.21982804751882 35.0 32.0 39.0 21.0 40.0 41 33.37473637380463 35.0 32.0 39.0 22.0 40.0 42 33.29639453798001 35.0 32.0 39.0 21.0 40.0 43 33.22614878065671 35.0 32.0 39.0 21.0 40.0 44 33.1906586615239 35.0 32.0 39.0 21.0 40.0 45 32.950397354189796 35.0 32.0 39.0 20.0 40.0 46 32.779939017096616 35.0 31.0 39.0 20.0 40.0 47 32.6744528641609 35.0 31.0 39.0 20.0 40.0 48 32.63382557546582 35.0 31.0 39.0 20.0 40.0 49 32.52166404002291 35.0 31.0 39.0 18.0 40.0 50 32.37128011634178 35.0 31.0 39.0 18.0 40.0 51 30.52561554749259 34.0 28.0 37.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 7.0 10 7.0 11 10.0 12 8.0 13 23.0 14 27.0 15 75.0 16 186.0 17 297.0 18 714.0 19 1381.0 20 2305.0 21 3339.0 22 4499.0 23 5541.0 24 6271.0 25 6822.0 26 7442.0 27 8568.0 28 10545.0 29 12864.0 30 16062.0 31 20460.0 32 26568.0 33 36818.0 34 59847.0 35 58697.0 36 42682.0 37 51870.0 38 57316.0 39 35269.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.595645157567148 37.88536641155695 20.994613106917342 23.52437532395856 2 19.922900486226382 38.06499946487817 19.9317142575342 22.080385791361245 3 18.73304135967112 34.68302950305019 22.568710692153854 24.01521844512483 4 21.139410778402905 33.21050013955138 19.224304184233002 26.425784897812715 5 16.517217282546422 40.08587131474187 18.86776614966203 24.52914525304967 6 20.602819987115105 36.72719489137027 21.74944966392251 20.92053545759212 7 70.67637300719582 14.853303170649301 7.573547773788264 6.896776048366619 8 73.64640408623227 9.90437058131019 6.970643845994036 9.478581486463517 9 68.86703166871972 14.711023719537403 11.024349092496333 5.397595519246549 10 46.73984894874792 25.748803320693263 11.935525164366343 15.575822566192471 11 39.53668942158576 23.835165688408004 21.24706469937695 15.381080190629282 12 36.55511649917004 25.256491237642358 24.26326315193053 13.925129111257077 13 22.708471922892095 40.78782524390013 18.526127585635233 17.977575247572542 14 13.506265122437974 39.97842724546563 31.254472464309472 15.260835167786924 15 11.160752696069688 29.601890344093828 37.30113928486738 21.9362176749691 16 11.880124316145778 26.382135744669245 39.57173465511923 22.16600528406575 17 12.442526866263611 27.611027287016267 28.95470770806271 30.99173813865741 18 18.909316785827457 27.641455783198015 28.04458089468173 25.404646536292802 19 20.632828779901242 33.43818923166998 27.55394762521326 18.375034363215516 20 26.27951826444252 31.11974767431856 23.350618118175884 19.250115943063037 21 17.506038482604342 33.9229466535999 24.31006008054108 24.260954783254675 22 16.992531378075114 33.38719526910332 24.388334763822407 25.231938588999153 23 20.418150493046564 32.024628195254415 20.40430028099142 27.1529210307076 24 15.902561659675108 33.05730840015361 28.26093799511885 22.779191945052432 25 15.380240783838062 28.46386458689644 29.046203048305763 27.109691580959737 26 17.508766554675812 37.23755422043242 23.05367796578158 22.200001259110184 27 14.429402741082878 34.5084328904763 27.84627104025585 23.215893328184972 28 15.952716215450542 30.68703347344432 30.514955081244082 22.84529522986106 29 15.325259639013108 30.600994277344203 29.292988644924634 24.780757438718055 30 20.85233365580544 30.629743959943507 24.815802672251518 23.70211971199953 31 25.08651136242018 33.47911031274198 16.569680206997713 24.864698117840124 32 23.982901283662837 29.597693310137725 20.720127086188192 25.69927832001125 33 26.793445072367355 29.21072677938501 20.783712150623153 23.21211599762448 34 16.113462615969297 29.948145645472344 20.812671684920268 33.12572005363809 35 20.477538523525425 27.436850377837985 24.942553097725835 27.14305800091076 36 24.25948582137004 25.83820014395826 26.85178384435719 23.050530190314504 37 19.413170712257646 31.854858171730037 24.15183190039599 24.580139215616324 38 22.105777846795668 33.384677048729664 22.325912277793282 22.183632826681386 39 21.558694470617613 27.312618172737324 24.77194366741024 26.35674368923482 40 25.43738340115041 28.35809933120264 18.84971890365079 27.354798363996164 41 18.211979594020907 22.670278913891554 27.222801646076718 31.89493984601082 42 24.748440277256062 26.070086270032967 21.20761258018958 27.97386087252139 43 21.64830114558042 24.179322472808465 26.134510741259152 28.03786564035196 44 19.774535335878134 26.35548457904799 24.789990913421487 29.079989171652393 45 23.0299647239296 31.52748952315399 23.159023518079774 22.283522234836642 46 19.79992739131256 26.38906085069681 30.653247350097683 23.15776440789294 47 20.77657719289778 26.820935644779837 23.593836235932066 28.80865092639032 48 21.43257360023671 20.567564901883838 34.790683424024245 23.209178073855206 49 22.11585072829032 20.879194673124505 30.29880783250477 26.706146766080412 50 18.959051638207278 24.950737313940238 25.08294388355749 31.007267164294994 51 17.830049504015513 26.45243606343397 30.574762815118557 25.142751617431962 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4596.0 1 3788.0 2 2980.0 3 2138.0 4 1296.0 5 1227.5 6 1159.0 7 1227.0 8 1295.0 9 1375.0 10 1455.0 11 1539.5 12 1624.0 13 1833.0 14 2042.0 15 2141.0 16 2240.0 17 2393.5 18 2547.0 19 2535.0 20 2523.0 21 2380.0 22 2237.0 23 2234.0 24 2231.0 25 2513.5 26 2891.0 27 2986.0 28 4153.5 29 5321.0 30 5690.0 31 6059.0 32 5907.5 33 5756.0 34 6803.5 35 7851.0 36 8514.0 37 9177.0 38 10046.0 39 10915.0 40 15398.0 41 19881.0 42 25749.5 43 31618.0 44 37865.5 45 44113.0 46 51327.0 47 58541.0 48 54603.5 49 50666.0 50 50195.5 51 49725.0 52 43888.5 53 38052.0 54 33198.5 55 28345.0 56 23011.0 57 17677.0 58 15675.0 59 13673.0 60 12788.0 61 11903.0 62 10780.5 63 9658.0 64 8993.5 65 8329.0 66 6607.5 67 4886.0 68 4141.5 69 3397.0 70 2850.5 71 2304.0 72 1951.5 73 1599.0 74 1464.0 75 962.5 76 596.0 77 542.0 78 488.0 79 422.5 80 357.0 81 257.0 82 157.0 83 117.0 84 77.0 85 52.5 86 28.0 87 24.5 88 21.0 89 15.5 90 10.0 91 9.0 92 8.0 93 5.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 476527.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.614265353819768 #Duplication Level Percentage of deduplicated Percentage of total 1 79.97526316605978 23.684086651412624 2 9.432733287329524 5.586869331655704 3 3.4743835200139612 3.0867394650789555 4 1.6538426084578162 1.9590933544129288 5 0.9785745335174866 1.4489882952038622 6 0.6367851883844511 1.1314755325319548 7 0.43406932070363746 0.8998250831688872 8 0.289750574732776 0.6864600325246573 9 0.22263788215855415 0.5933931588050292 >10 1.5476667707229232 10.50945529222654 >50 0.7028339044785692 15.206198712747888 >100 0.6386155781810349 27.289888346005554 >500 0.005708295670891933 1.2304507254430248 >1k 0.005708295670891933 4.088612585711332 >5k 0.0014270739177229832 2.598463433071076 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCT 6641 1.393625125124075 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC 5656 1.186921202785991 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGT 4711 0.9886113483601139 No Hit AATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT 4499 0.9441227884254197 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4016 0.842764418385527 No Hit AAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCT 1757 0.36870943304366804 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 1193 0.2503530754815572 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1065 0.22349205816249657 No Hit AAAAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT 1061 0.22265265137127593 No Hit AATGACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTT 1047 0.21971472760200367 No Hit AATGATCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCT 919 0.19285371028294304 No Hit AACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTG 843 0.1769049812497508 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 796 0.16704195145290823 No Hit TGAATGATACCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCC 776 0.16284491749680502 No Hit TCAAGAGGTTTCAGCATTCCCAATTATCAAAAAACAGAAAAACAAACAAAA 737 0.15466070128240372 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTACGCATCGTAT 665 0.13955137904043213 No Hit CCTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGC 544 0.11415932360600764 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCT 543 0.11394947190820248 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.837881169377601 0.0 2 0.0 0.0 0.0 2.1937896488551543 0.0 3 0.0 0.0 0.0 2.7927063943910837 0.0 4 0.0 0.0 0.0 5.864305695165227 0.0 5 0.0 0.0 0.0 6.205104852400808 0.0 6 0.0 0.0 0.0 8.133851806928044 0.0 7 0.0 0.0 0.0 9.755375875868523 0.0 8 0.0 0.0 0.0 10.646825888144848 0.0 9 0.0 0.0 0.0 13.037456429541244 0.0 10 0.0 0.0 0.0 14.94060147693625 0.0 11 0.0 0.0 0.0 18.582787544042624 0.0 12 0.0 0.0 0.0 19.62470122364525 0.0 13 0.0 0.0 0.0 20.1512191334384 0.0 14 0.0 0.0 0.0 20.724743823539903 0.0 15 2.098516978051611E-4 0.0 0.0 21.09303355318796 0.0 16 2.098516978051611E-4 0.0 0.0 21.75574521485666 0.0 17 2.098516978051611E-4 0.0 0.0 22.521913763543303 0.0 18 2.098516978051611E-4 0.0 0.0 23.615660812503805 0.0 19 2.098516978051611E-4 0.0 0.0 24.03137702585583 0.0 20 2.098516978051611E-4 0.0 0.0 24.45842523088933 0.0 21 2.098516978051611E-4 0.0 0.0 24.901422164956024 0.0 22 2.098516978051611E-4 0.0 0.0 25.319446746983907 0.0 23 2.098516978051611E-4 0.0 0.0 25.745865396923993 0.0 24 2.098516978051611E-4 0.0 0.0 26.047212434972206 0.0 25 2.098516978051611E-4 0.0 0.0 26.2707044931347 0.0 26 2.098516978051611E-4 0.0 0.0 26.496924623368667 0.0 27 2.098516978051611E-4 0.0 0.0 26.71873786794872 0.0 28 2.098516978051611E-4 0.0 0.0 26.932366896314374 0.0 29 2.098516978051611E-4 0.0 0.0 27.140120077141486 0.0 30 2.098516978051611E-4 0.0 0.0 27.45174984838215 0.0 31 2.098516978051611E-4 0.0 0.0 27.71532358082543 0.0 32 2.098516978051611E-4 0.0 0.0 27.951406740856235 0.0 33 2.098516978051611E-4 0.0 0.0 28.160628883567984 0.0 34 2.098516978051611E-4 0.0 0.0 28.386429310406335 0.0 35 2.098516978051611E-4 0.0 0.0 28.65545918699255 0.0 36 2.098516978051611E-4 0.0 0.0 28.883358130808958 0.0 37 2.098516978051611E-4 0.0 0.0 29.10307285841096 0.0 38 2.098516978051611E-4 0.0 0.0 29.334119577694445 0.0 39 2.098516978051611E-4 0.0 0.0 29.566425407164758 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGTGT 20 7.0291234E-4 45.000004 22 CTTCGTT 20 7.0291234E-4 45.000004 23 TCGCCGG 20 7.0291234E-4 45.000004 21 TTTAGCA 20 7.0291234E-4 45.000004 24 AGACTTC 35 1.209919E-7 45.000004 23 CAGGTCG 20 7.0291234E-4 45.000004 1 TCGTTTA 20 7.0291234E-4 45.000004 9 AGCAAGT 20 7.0291234E-4 45.000004 3 CGGAACG 40 6.8012014E-9 45.000004 1 GTCGCTC 20 7.0291234E-4 45.000004 17 TCGTTGT 20 7.0291234E-4 45.000004 25 TTGGCAA 55 1.8189894E-12 45.000004 30 ATCTCCC 20 7.0291234E-4 45.000004 11 GCCCAAC 20 7.0291234E-4 45.000004 40 ACCGGGA 160 0.0 45.000004 4 TCCGCTA 20 7.0291234E-4 45.000004 40 AATCATA 20 7.0291234E-4 45.000004 12 CATATGG 35 1.209919E-7 45.000004 2 TCCGCGC 20 7.0291234E-4 45.000004 39 GTATTGA 20 7.0291234E-4 45.000004 9 >>END_MODULE