SRR3552936_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552936_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	757190
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCTGCT	5021	0.6631096554365483	Illumina PCR Primer Index 3 (95% over 24bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCC	4205	0.5553427805438529	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGT	3675	0.48534713876305813	No Hit
AATCTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	3618	0.47781930559040664	Illumina PCR Primer Index 3 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2878	0.3800895415945799	No Hit
AAACTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTTCT	1338	0.17670597868434607	TruSeq Adapter, Index 14 (95% over 23bp)
AATGACTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	814	0.10750274039540933	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATTGCGTCTCGTATGCCGTCTT	805	0.10631413515762227	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGAA	30	2.1645155E-6	45.000004	4
GCGTTAG	115	0.0	45.000004	1
TGTGACG	30	2.1645155E-6	45.000004	18
ACGTGAC	30	2.1645155E-6	45.000004	31
CTCGCTA	30	2.1645155E-6	45.000004	10
CAAGCCG	30	2.1645155E-6	45.000004	1
TATCGTG	30	2.1645155E-6	45.000004	1
AGTAACG	30	2.1645155E-6	45.000004	1
TACAACG	30	2.1645155E-6	45.000004	1
CTTACCG	30	2.1645155E-6	45.000004	1
CTTAACG	40	6.8102963E-9	45.0	1
AACCGTA	20	7.03176E-4	45.0	27
CGGCGGA	20	7.03176E-4	45.0	41
CGACGAT	25	3.8895407E-5	45.0	35
ACGCAAC	20	7.03176E-4	45.0	31
CGTTGGA	20	7.03176E-4	45.0	30
ACATTCG	20	7.03176E-4	45.0	1
CCGGACT	25	3.8895407E-5	45.0	35
TAAACGT	20	7.03176E-4	45.0	33
GTCTATC	25	3.8895407E-5	45.0	25