SRR3552935_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552935_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	744098
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	5310	0.7136156796550992	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2478	0.33302065050571295	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCC	2247	0.3019763525772143	No Hit
AATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT	2023	0.2718727909495792	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGT	1884	0.25319245583243066	No Hit
AAACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCT	1323	0.17779916086321962	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1216	0.16341933455001895	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	836	0.11235079250313802	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTT	814	0.10939419270042387	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	745	0.10012122059191127	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	40	6.8102963E-9	45.0	30
GTACCGG	50	2.1827873E-11	45.0	2
AGTCCAT	20	7.031681E-4	45.0	37
CGTATCC	20	7.031681E-4	45.0	38
GTTTCGG	25	3.8894745E-5	45.0	23
ACGTTTG	25	3.8894745E-5	45.0	33
CTATCGT	20	7.031681E-4	45.0	43
TAGACGT	25	3.8894745E-5	45.0	1
TTTCGGT	25	3.8894745E-5	45.0	24
CGTGATA	20	7.031681E-4	45.0	15
ATAATGC	20	7.031681E-4	45.0	30
CGTGACG	20	7.031681E-4	45.0	18
TAGCGGA	20	7.031681E-4	45.0	3
ATTACGT	20	7.031681E-4	45.0	29
TTGTCGG	25	3.8894745E-5	45.0	40
CCAATGC	40	6.8102963E-9	45.0	39
CGCGCGA	25	3.8894745E-5	45.0	31
CGTCTTA	35	1.2111559E-7	45.0	39
GATTTCG	20	7.031681E-4	45.0	10
TCTAGTC	25	3.8894745E-5	45.0	14