SRR3552921_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552921_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617901
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCC	7209	1.1666917515912745	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGT	6319	1.0226557328763022	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	5233	0.8468994223993812	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTGCT	4310	0.6975227423163257	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1822	0.29486924280750476	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	1287	0.20828579335524625	No Hit
AAACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCT	1021	0.16523682596402983	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCT	944	0.1527752827718356	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTAT	710	0.11490513852542722	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTT	706	0.11425778563232622	No Hit
AACTGTCTCTTATACACATCTGACGCTTAGCGGTTCGTATGCCGTCTTCTG	656	0.10616587446856374	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTAGCG	30	2.1638662E-6	45.000004	1
CGACAAT	30	2.1638662E-6	45.000004	20
ACGGCAT	30	2.1638662E-6	45.000004	23
CATAGGT	30	2.1638662E-6	45.000004	26
AGCGATA	30	2.1638662E-6	45.000004	43
GCGATAC	30	2.1638662E-6	45.000004	44
AACCTTA	30	2.1638662E-6	45.000004	24
CGTGTAC	30	2.1638662E-6	45.000004	37
CTCGAAC	30	2.1638662E-6	45.000004	21
AGGATCG	30	2.1638662E-6	45.000004	45
CAATCTA	30	2.1638662E-6	45.000004	11
CGATAGT	30	2.1638662E-6	45.000004	30
TACACCG	30	2.1638662E-6	45.000004	1
TAGTACG	65	0.0	45.000004	1
TGATCGG	20	7.030752E-4	45.0	16
CGTGGGA	20	7.030752E-4	45.0	4
AGACTCG	20	7.030752E-4	45.0	43
CCTTACG	20	7.030752E-4	45.0	1
TACCCGT	20	7.030752E-4	45.0	34
TTGGATC	20	7.030752E-4	45.0	43