SRR3552919_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552919_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608087
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	5401	0.8881952746893126	TruSeq Adapter, Index 27 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCC	2089	0.3435363689735186	No Hit
AATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	2041	0.3356427616443042	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGT	1921	0.31590874332126817	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1586	0.2608179421694593	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	1114	0.18319747009885098	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTT	668	0.1098527019982338	No Hit
GCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCCTA	613	0.10080794360017563	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	610	0.10031459314209974	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGCG	30	2.163808E-6	45.000004	1
CGAAACG	30	2.163808E-6	45.000004	1
TTTCGCG	30	2.163808E-6	45.000004	1
GAGTACG	60	0.0	45.000004	1
GGCGTAA	35	1.2106648E-7	45.000004	10
TAGCGCG	35	1.2106648E-7	45.000004	1
CGCTACG	35	1.2106648E-7	45.000004	1
CATCGCG	35	1.2106648E-7	45.000004	1
CGTAACG	30	2.163808E-6	45.000004	1
CTTTCGT	30	2.163808E-6	45.000004	14
CCGCGTC	30	2.163808E-6	45.000004	41
ACGTAAA	30	2.163808E-6	45.000004	25
CGCGTCA	30	2.163808E-6	45.000004	42
TGTCGCC	35	1.2106648E-7	45.000004	26
CGATAAG	30	2.163808E-6	45.000004	1
CCGTTGG	35	1.2106648E-7	45.000004	2
TGCGTAA	30	2.163808E-6	45.000004	12
ATTTCGG	30	2.163808E-6	45.000004	2
TCACGAC	20	7.0306635E-4	45.0	25
TCGCCCG	20	7.0306635E-4	45.0	2