SRR3552918_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552918_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	627145
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	5127	0.8175142909534477	TruSeq Adapter, Index 27 (95% over 23bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCC	1904	0.30359805148729563	No Hit
AATCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	1893	0.3018440711478207	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGT	1792	0.2857393425762782	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1702	0.27138859434421064	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCT	972	0.15498808090632946	No Hit
GCAAGGTGGGGTGAGGCCCGGAGTTGGGGAAGCTAGGAGGCTTAAAGCCTA	645	0.10284702899648407	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGA	30	2.163917E-6	45.000004	32
GGCGTAA	30	2.163917E-6	45.000004	10
TAGCGCG	30	2.163917E-6	45.000004	1
GTCTACG	30	2.163917E-6	45.000004	1
CGATTGC	30	2.163917E-6	45.000004	27
ACCCTTA	30	2.163917E-6	45.000004	41
CGTAGCG	30	2.163917E-6	45.000004	1
CGAATCG	30	2.163917E-6	45.000004	1
CGACTGA	30	2.163917E-6	45.000004	43
TGCAACG	65	0.0	45.000004	1
TCACGGA	20	7.030833E-4	45.0	41
CGGGTTA	40	6.8066583E-9	45.0	6
AGCCGTA	20	7.030833E-4	45.0	26
TAATACG	25	3.8887716E-5	45.0	1
TCGTTGC	20	7.030833E-4	45.0	44
CTCACCG	25	3.8887716E-5	45.0	1
AATCATC	20	7.030833E-4	45.0	20
ATAGGTT	20	7.030833E-4	45.0	36
CACGGTA	20	7.030833E-4	45.0	43
CGAGTAA	20	7.030833E-4	45.0	16