SRR3552917_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552917_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	686147
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	3796	0.5532342194894098	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1831	0.26685243832589806	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	1686	0.24571994047922677	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	1519	0.22138113261443976	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1485	0.2164259262228065	No Hit
AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1150	0.1676025691287727	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	839	0.12227700478177417	No Hit

Adapter graph

$Kmer graph$

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATAGT	35	1.210974E-7	45.000004	43
GGTAATC	35	1.210974E-7	45.000004	8
ACGCATG	25	3.889155E-5	45.000004	1
CATGCAA	25	3.889155E-5	45.000004	36
GACGTTG	25	3.889155E-5	45.000004	1
TGTATCG	25	3.889155E-5	45.000004	14
CAATTCG	35	1.210974E-7	45.000004	1
TACGGGT	35	1.210974E-7	45.000004	4
TATGCGG	25	3.889155E-5	45.000004	2
TTATCCG	25	3.889155E-5	45.000004	1
TCGTGGC	25	3.889155E-5	45.000004	18
ATATACG	35	1.210974E-7	45.000004	1
CTACGGT	25	3.889155E-5	45.000004	3
CGTAGCG	25	3.889155E-5	45.000004	1
CGTAGAA	25	3.889155E-5	45.000004	17
TACCTCC	25	3.889155E-5	45.000004	13
TGCCTAA	25	3.889155E-5	45.000004	35
CGGCTGA	35	1.210974E-7	45.000004	32
CCGGTTA	25	3.889155E-5	45.000004	20
CCGCGTA	25	3.889155E-5	45.000004	14