SRR3552916_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552916_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	704942
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	3548	0.5033038179027495	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1976	0.2803067486403137	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	1559	0.22115294591611795	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	1465	0.20781851556581962	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1255	0.17802883074068504	No Hit
AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1057	0.1499414136198439	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	768	0.10894513307477778	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGA	20	7.031427E-4	45.000004	31
CAAACGA	20	7.031427E-4	45.000004	39
CGAACGC	30	2.1643027E-6	45.000004	34
CGAACAT	25	3.8892642E-5	45.000004	24
CTCGTCA	25	3.8892642E-5	45.000004	19
ACGTTCA	20	7.031427E-4	45.000004	31
GCGGTCA	25	3.8892642E-5	45.000004	12
GACACGT	25	3.8892642E-5	45.000004	9
CCGGCAT	25	3.8892642E-5	45.000004	11
ATAGCGT	20	7.031427E-4	45.000004	30
TAAACCG	65	0.0	45.000004	1
TTCGTTC	25	3.8892642E-5	45.000004	33
TAACGAT	30	2.1643027E-6	45.000004	37
TCGATCC	20	7.031427E-4	45.000004	27
TCGATAG	40	6.8084773E-9	45.000004	1
ACCTCTA	20	7.031427E-4	45.000004	14
CCGTCCG	30	2.1643027E-6	45.000004	1
CCGTCCC	25	3.8892642E-5	45.000004	38
CCGTCCA	20	7.031427E-4	45.000004	39
CGTTAGA	20	7.031427E-4	45.000004	27