SRR3552915_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552915_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	695084
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCC	9256	1.3316376150220692	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGT	7429	1.0687916856092212	No Hit
AATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	7238	1.0413129923865319	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	4851	0.6979012608548032	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2000	0.2877350075674307	No Hit
AATGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	1635	0.2352233686863746	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCT	1396	0.20083903528206665	No Hit
AAACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	1147	0.1650160268399215	No Hit
AACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTG	991	0.1425726962496619	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTAT	859	0.12358218575021149	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	748	0.10761289283021908	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	718	0.10329686771670762	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTT	30	2.1642572E-6	45.000004	42
TCCGCAA	30	2.1642572E-6	45.000004	17
GTCGAAC	30	2.1642572E-6	45.000004	40
TGCTTCG	35	1.2109922E-7	45.000004	1
ATTGTCG	30	2.1642572E-6	45.000004	45
TTGTACT	30	2.1642572E-6	45.000004	41
GCGCATC	30	2.1642572E-6	45.000004	39
GACCCGA	30	2.1642572E-6	45.000004	9
GGCCCAC	35	1.2109922E-7	45.000004	9
CTACGAA	30	2.1642572E-6	45.000004	10
TCGCTAT	30	2.1642572E-6	45.000004	38
CTCGACC	35	1.2109922E-7	45.000004	29
TGAGGTC	30	2.1642572E-6	45.000004	17
TACTACG	55	1.8189894E-12	45.000004	1
CACCGTC	55	1.8189894E-12	45.000004	29
TAGTGCG	30	2.1642572E-6	45.000004	1
GATTCGT	30	2.1642572E-6	45.000004	7
TCGACTT	30	2.1642572E-6	45.000004	36
TCGACGG	30	2.1642572E-6	45.000004	2
TCGACGA	30	2.1642572E-6	45.000004	44