SRR3552912_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552912_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493065
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT	4476	0.9077910620303611	Illumina PCR Primer Index 8 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCC	3515	0.7128877531359963	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT	3439	0.6974739638790017	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGT	3128	0.6343991157352479	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2177	0.44152393700627707	No Hit
AAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT	1302	0.26406254753430075	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT	957	0.19409205682820724	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	883	0.17908389360429153	No Hit
AATGACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT	732	0.1484591281068419	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	619	0.1255412572378895	No Hit
AACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG	586	0.11884842769208928	TruSeq Adapter, Index 14 (95% over 21bp)
AATGATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	567	0.11499498037784064	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	549	0.11134434608013141	No Hit
CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC	513	0.10404307748471298	TruSeq Adapter, Index 14 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCT	35	1.2100463E-7	45.000004	24
TAGAGTA	20	7.029362E-4	45.000004	28
TCGCAGG	80	0.0	45.000004	2
CGAACGG	40	6.8012014E-9	45.000004	2
GTCGATC	20	7.029362E-4	45.000004	34
CCCTCCG	20	7.029362E-4	45.000004	37
TTGTGCG	20	7.029362E-4	45.000004	24
GTCGAAC	20	7.029362E-4	45.000004	18
TCTCTAA	20	7.029362E-4	45.000004	4
ACGTTCC	20	7.029362E-4	45.000004	17
CGTGCCG	20	7.029362E-4	45.000004	13
TTTCGCG	20	7.029362E-4	45.000004	1
ACTCTTG	35	1.2100463E-7	45.000004	19
ATTACCG	20	7.029362E-4	45.000004	1
CGATTCG	20	7.029362E-4	45.000004	27
TGCGGTA	20	7.029362E-4	45.000004	12
CTAAGCG	20	7.029362E-4	45.000004	1
CACGAGA	35	1.2100463E-7	45.000004	30
ACTTAGC	20	7.029362E-4	45.000004	30
TCGATGG	20	7.029362E-4	45.000004	2