##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552912_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 493065 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.139152038777848 31.0 31.0 34.0 28.0 34.0 2 31.331479622362163 31.0 31.0 34.0 28.0 34.0 3 31.32633831239289 31.0 31.0 34.0 28.0 34.0 4 35.35147495766278 37.0 35.0 37.0 33.0 37.0 5 34.99757841258252 37.0 35.0 37.0 32.0 37.0 6 35.05453844827761 36.0 35.0 37.0 32.0 37.0 7 34.96242686055591 36.0 35.0 37.0 32.0 37.0 8 35.34648778558608 37.0 35.0 37.0 33.0 37.0 9 35.835944550921276 39.0 37.0 39.0 32.0 39.0 10 35.69384563901311 38.0 35.0 39.0 30.0 39.0 11 36.050999361139 37.0 35.0 39.0 31.0 39.0 12 35.70018963017046 37.0 35.0 39.0 31.0 39.0 13 35.337647166195126 37.0 35.0 39.0 30.0 39.0 14 36.274935353350976 38.0 35.0 40.0 30.0 41.0 15 36.444651313721316 38.0 35.0 40.0 31.0 41.0 16 36.531518156835304 38.0 35.0 40.0 31.0 41.0 17 36.486402401306115 38.0 35.0 40.0 31.0 41.0 18 36.335661626763205 38.0 35.0 40.0 31.0 41.0 19 36.32336912983075 38.0 35.0 40.0 31.0 41.0 20 36.26848589942502 38.0 34.0 40.0 30.0 41.0 21 36.25324652936226 38.0 34.0 40.0 31.0 41.0 22 36.27416466388813 38.0 35.0 40.0 31.0 41.0 23 36.207307352985914 38.0 35.0 40.0 31.0 41.0 24 35.80608439049618 38.0 34.0 40.0 30.0 41.0 25 35.957405210266394 38.0 34.0 40.0 30.0 41.0 26 35.78088892945149 38.0 34.0 40.0 30.0 41.0 27 35.68273148570675 38.0 34.0 40.0 29.0 41.0 28 35.658998306511315 38.0 34.0 40.0 29.0 41.0 29 35.33929197975926 37.0 34.0 40.0 27.0 41.0 30 35.414977741271436 37.0 34.0 40.0 29.0 41.0 31 35.15635463884072 37.0 34.0 40.0 27.0 41.0 32 35.02392787969132 37.0 34.0 40.0 27.0 41.0 33 34.94859704095809 37.0 34.0 40.0 27.0 41.0 34 34.646866031861926 37.0 33.0 40.0 25.0 41.0 35 34.58079766359405 37.0 33.0 40.0 25.0 41.0 36 34.339584030503076 37.0 33.0 40.0 24.0 41.0 37 34.16566375629988 36.0 33.0 40.0 23.0 41.0 38 34.20372567511383 36.0 33.0 40.0 24.0 41.0 39 33.96674272154787 36.0 33.0 40.0 23.0 41.0 40 33.74685082088568 36.0 32.0 40.0 22.0 41.0 41 33.67680528936347 36.0 32.0 40.0 22.0 41.0 42 33.67472442781378 36.0 32.0 40.0 22.0 41.0 43 33.62460527516656 36.0 32.0 39.0 22.0 41.0 44 33.57400951193048 35.0 32.0 39.0 22.0 41.0 45 33.33478344640159 35.0 32.0 39.0 22.0 41.0 46 33.07983531583057 35.0 32.0 39.0 21.0 40.0 47 32.893817245190796 35.0 31.0 39.0 20.0 40.0 48 32.75642156713618 35.0 31.0 39.0 20.0 40.0 49 32.57172380923408 35.0 31.0 39.0 20.0 40.0 50 32.37883646172411 35.0 31.0 38.0 19.0 40.0 51 30.54354091245576 34.0 28.0 37.0 12.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 4.0 10 7.0 11 9.0 12 11.0 13 13.0 14 22.0 15 59.0 16 124.0 17 287.0 18 566.0 19 1049.0 20 1836.0 21 2730.0 22 3870.0 23 4665.0 24 5587.0 25 6324.0 26 7096.0 27 8292.0 28 10019.0 29 12182.0 30 15427.0 31 19588.0 32 24878.0 33 33861.0 34 54690.0 35 56587.0 36 49357.0 37 60424.0 38 67778.0 39 45721.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.049080750002535 35.349294717734985 19.940981412187035 24.660643120075445 2 19.70510987395171 35.71435814750591 21.285226085810187 23.295305892732195 3 20.21356210641599 33.862675306501174 21.98858162716883 23.935180959914007 4 21.60972691227323 32.009572774380665 19.516696581586608 26.864003731759507 5 17.58044071268494 37.38756553395597 18.374250859420158 26.657742893938934 6 20.773934471114355 36.512630180604994 21.28056138642978 21.43287396185087 7 76.74241732834413 10.487258272235913 6.663016032368957 6.107308367050997 8 79.22484865078641 7.614006266922211 5.549369758551103 7.611775323740277 9 71.69338728159573 13.238619654609431 9.753886404429437 5.3141066593653985 10 42.583635017695435 29.23853852940282 12.828937361199841 15.348889091701906 11 34.844695932584955 24.755762424832426 24.856966120085588 15.542575522497035 12 33.94562583026578 23.79970186486569 26.650847251376593 15.603825053491931 13 23.709855698538732 36.0905762931865 21.039213896747892 19.16035411152688 14 15.241803818969101 37.24600204841147 29.520448622392585 17.99174551022685 15 15.071846511109083 29.829941285631712 34.5443298550901 20.553882348169104 16 15.634855445022461 26.097776155273642 36.53412836035817 21.733240039345723 17 15.517832334479225 27.488262196667783 28.17823207893483 28.815673389918167 18 19.046170383215195 28.899435165748937 26.961962418748037 25.09243203228783 19 22.035431433989434 32.39167249754089 26.538488840213763 19.03440722825591 20 24.87562491760721 30.387068642065447 24.267185867989006 20.47012057233833 21 18.130266800523255 33.22036648312089 25.251437437254726 23.39792927910113 22 17.915285002991492 30.84927950675874 26.20080516767566 25.034630322574102 23 20.38575035745794 31.39606339934897 21.862026304848246 26.35615993834484 24 17.465851358340178 32.52776003163883 27.192966444586414 22.813422165434577 25 18.215651080486346 29.051747741170033 26.853051828866377 25.879549349477248 26 19.689696084694717 35.806232443998255 22.146978593086104 22.357092878220925 27 18.39939967347104 33.51343129202032 24.64299838763652 23.444170646872116 28 22.47938912719418 29.81615000050703 28.48326285581009 19.221198016488696 29 18.587812965836147 30.92878220924219 27.860626895034123 22.62277792988754 30 25.210266394897225 29.29228397878576 24.077758510541205 21.41969111577581 31 28.625231967387666 31.572105097705172 19.107419914210094 20.695243020697067 32 27.26111161814365 29.2991796213481 20.226744952491053 23.212963808017196 33 30.758622088365634 27.727175930151198 21.201464309979414 20.312737671503758 34 21.862634743897864 29.72265319988237 23.660977761552736 24.753734294667034 35 25.699654203806798 30.399440236074348 22.1834849360632 21.717420624055652 36 29.032480504598784 27.036597608834533 26.431606380497502 17.49931550606918 37 24.630423980611077 30.62679362761502 23.654284932006934 21.088497459766966 38 27.408556681167795 27.432285804102907 23.89745773883768 21.261699775891614 39 23.170778700577003 26.59771024104327 27.484814375386613 22.746696682993115 40 25.925182278198616 27.82594586920589 22.915842738786978 23.33302911380852 41 20.256355652905803 24.445864135560218 31.082920101812135 24.21486010972184 42 25.758875604636305 26.599738371208666 24.03618184215063 23.605204182004403 43 23.437680630342854 25.62887246103455 26.905580400150082 24.027866508472513 44 23.005080466064314 25.95012827923296 24.275298388650583 26.76949286605214 45 24.634885866974944 29.452506261851884 23.381298611744903 22.53130925942827 46 21.558009593055683 27.492521270015107 29.61333698396763 21.336132152961575 47 22.204171863750215 26.795250119152648 26.188433573666757 24.812144443430377 48 24.424568768823583 21.937878373033982 31.93534321032724 21.702209647815195 49 22.28854207863061 22.130347925729872 29.34927443643333 26.23183555920619 50 20.249460010343466 24.75515398578281 26.28213318730796 28.713252816565767 51 20.521026639489722 24.629815541561456 29.501384198837883 25.347773620110935 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2656.0 1 2309.5 2 1963.0 3 1471.5 4 980.0 5 1007.5 6 1035.0 7 1129.5 8 1224.0 9 1436.0 10 1648.0 11 1724.0 12 1800.0 13 1896.5 14 1993.0 15 2011.0 16 2029.0 17 2070.5 18 2112.0 19 2127.5 20 2143.0 21 2058.0 22 1973.0 23 2090.5 24 2208.0 25 2496.5 26 3071.5 27 3358.0 28 4336.0 29 5314.0 30 6125.0 31 6936.0 32 8406.0 33 9876.0 34 9976.5 35 10077.0 36 11124.5 37 12172.0 38 13155.0 39 14138.0 40 16720.5 41 19303.0 42 23880.0 43 28457.0 44 34454.5 45 40452.0 46 45985.5 47 51519.0 48 50117.5 49 48716.0 50 49068.0 51 49420.0 52 45726.0 53 42032.0 54 36381.5 55 30731.0 56 27112.0 57 23493.0 58 19886.0 59 16279.0 60 16156.5 61 16034.0 62 14223.5 63 12413.0 64 10771.5 65 9130.0 66 7575.5 67 6021.0 68 4804.0 69 3587.0 70 2614.5 71 1642.0 72 1863.0 73 2084.0 74 1726.0 75 1154.0 76 940.0 77 663.0 78 386.0 79 296.0 80 206.0 81 178.0 82 150.0 83 98.0 84 46.0 85 33.0 86 20.0 87 20.0 88 20.0 89 68.5 90 117.0 91 77.0 92 37.0 93 35.5 94 34.0 95 19.0 96 4.0 97 2.5 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 493065.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.99272313380217 #Duplication Level Percentage of deduplicated Percentage of total 1 79.79673936005341 25.529149893263632 2 9.217632807059964 5.8979434869064225 3 3.328373158584421 3.1945116284571 4 1.643262278010434 2.1028974038643544 5 0.9222413338601888 1.4752505828368716 6 0.5752760613243295 1.1042788653272084 7 0.40004185951962234 0.895889991747986 8 0.3024440309660042 0.774080651693317 9 0.21935139136478196 0.6315883499652978 >10 2.2970224847809906 17.288781832246393 >50 0.9483553383595722 22.14364930984191 >100 0.34033719804033036 14.1819267076191 >500 0.005098684614836409 1.1022888413352243 >1k 0.0038240134611273067 3.6777624548951984 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT 4476 0.9077910620303611 Illumina PCR Primer Index 8 (95% over 21bp) AATGATACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCC 3515 0.7128877531359963 No Hit AATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT 3439 0.6974739638790017 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGT 3128 0.6343991157352479 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2177 0.44152393700627707 No Hit AAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT 1302 0.26406254753430075 No Hit AAAAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT 957 0.19409205682820724 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 883 0.17908389360429153 No Hit AATGACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT 732 0.1484591281068419 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 619 0.1255412572378895 No Hit AACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTG 586 0.11884842769208928 TruSeq Adapter, Index 14 (95% over 21bp) AATGATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT 567 0.11499498037784064 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT 549 0.11134434608013141 No Hit CCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGC 513 0.10404307748471298 TruSeq Adapter, Index 14 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2464887996511615 0.0 2 0.0 0.0 0.0 1.5868090414042773 0.0 3 0.0 0.0 0.0 2.0790362325454046 0.0 4 0.0 0.0 0.0 4.73406143206271 0.0 5 0.0 0.0 0.0 5.131169318446858 0.0 6 0.0 0.0 0.0 6.946548629491041 0.0 7 0.0 0.0 0.0 8.391794185350816 0.0 8 0.0 0.0 0.0 9.283765832091104 0.0 9 0.0 0.0 0.0 11.29100625678156 0.0 10 0.0 0.0 0.0 13.258089704197216 0.0 11 0.0 0.0 0.0 16.083477837607617 0.0 12 0.0 0.0 0.0 17.172583736424205 0.0 13 0.0 0.0 0.0 17.629318649670935 0.0 14 0.0 0.0 0.0 18.153995923458368 0.0 15 0.0 0.0 0.0 18.49107115694685 0.0 16 0.0 0.0 0.0 19.12202245140093 0.0 17 0.0 0.0 0.0 19.855597132223945 0.0 18 0.0 0.0 0.0 20.780627300660157 0.0 19 0.0 0.0 0.0 21.21748653828603 0.0 20 0.0 0.0 0.0 21.587011854420815 0.0 21 0.0 0.0 0.0 22.054901483577215 0.0 22 0.0 0.0 0.0 22.51366452698934 0.0 23 0.0 0.0 0.0 22.976281017715717 0.0 24 0.0 0.0 0.0 23.316195633435754 0.0 25 0.0 0.0 0.0 23.614330767748672 0.0 26 0.0 0.0 0.0 23.88427489276262 0.0 27 0.0 0.0 0.0 24.169835620050094 0.0 28 0.0 0.0 0.0 24.43673754981595 0.0 29 0.0 0.0 0.0 24.71661951264032 0.0 30 0.0 0.0 0.0 25.06586352712117 0.0 31 0.0 0.0 0.0 25.348382059160556 0.0 32 0.0 0.0 0.0 25.616703680042185 0.0 33 0.0 0.0 0.0 25.91727257055358 0.0 34 0.0 0.0 0.0 26.174236662509 0.0 35 0.0 0.0 0.0 26.484946203847365 0.0 36 0.0 0.0 0.0 26.75042844249744 0.0 37 0.0 0.0 0.0 27.029904779288735 0.0 38 0.0 0.0 0.0 27.30897549004695 0.0 39 0.0 0.0 0.0 27.56391145183698 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCGCT 35 1.2100463E-7 45.000004 24 TAGAGTA 20 7.029362E-4 45.000004 28 TCGCAGG 80 0.0 45.000004 2 CGAACGG 40 6.8012014E-9 45.000004 2 GTCGATC 20 7.029362E-4 45.000004 34 CCCTCCG 20 7.029362E-4 45.000004 37 TTGTGCG 20 7.029362E-4 45.000004 24 GTCGAAC 20 7.029362E-4 45.000004 18 TCTCTAA 20 7.029362E-4 45.000004 4 ACGTTCC 20 7.029362E-4 45.000004 17 CGTGCCG 20 7.029362E-4 45.000004 13 TTTCGCG 20 7.029362E-4 45.000004 1 ACTCTTG 35 1.2100463E-7 45.000004 19 ATTACCG 20 7.029362E-4 45.000004 1 CGATTCG 20 7.029362E-4 45.000004 27 TGCGGTA 20 7.029362E-4 45.000004 12 CTAAGCG 20 7.029362E-4 45.000004 1 CACGAGA 35 1.2100463E-7 45.000004 30 ACTTAGC 20 7.029362E-4 45.000004 30 TCGATGG 20 7.029362E-4 45.000004 2 >>END_MODULE