SRR3552911_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552911_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	599062
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	6217	1.0377890769235905	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCC	4297	0.7172880269487967	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	4082	0.6813985864568275	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGT	3777	0.6304856592472899	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2285	0.3814296349960438	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	1744	0.29112178706043784	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	1224	0.2043194193589311	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	912	0.15223799873802712	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	749	0.12502879501620867	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	692	0.11551392009508196	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	676	0.1128430780119587	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	609	0.10165892678887994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTACG	35	1.2106284E-7	45.000004	1
CCGATTT	35	1.2106284E-7	45.000004	7
CGTTAGG	45	3.8380676E-10	45.000004	2
TAACCCG	90	0.0	45.000004	1
AGGTTCG	35	1.2106284E-7	45.000004	21
TACGAAG	75	0.0	45.000004	1
ACTCGCG	35	1.2106284E-7	45.000004	1
CGAGATA	35	1.2106284E-7	45.000004	19
ACGTAAG	35	1.2106284E-7	45.000004	1
CCACACG	35	1.2106284E-7	45.000004	1
ACGCGAT	25	3.8885613E-5	45.0	13
ACAACGC	20	7.030579E-4	45.0	36
CGGAATA	20	7.030579E-4	45.0	41
TGTCACG	20	7.030579E-4	45.0	23
TCGCATA	25	3.8885613E-5	45.0	33
TCGTTAA	25	3.8885613E-5	45.0	14
CCCCTAC	25	3.8885613E-5	45.0	33
TACCCGT	25	3.8885613E-5	45.0	29
ACGCCTA	20	7.030579E-4	45.0	43
GCGCGTT	20	7.030579E-4	45.0	16