SRR3552906_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552906_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	564283
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGCT	4999	0.8859029954827631	TruSeq Adapter, Index 14 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2271	0.4024576320746859	No Hit
AAACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT	1654	0.29311533397249256	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCC	1612	0.2856722601956819	No Hit
AATCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCT	1589	0.28159629122266666	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGT	1378	0.24420370629630878	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTT	1192	0.21124152242757624	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	869	0.15400074076305684	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	698	0.1236967975288995	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCT	661	0.117139803963614	No Hit
CCTGTCTCTTATACACATCTGACGCACCTCGTTTCGTATGCCGTCTTCTGC	579	0.1026080884946029	TruSeq Adapter, Index 15 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAA	20	7.030229E-4	45.000004	18
CTTAATA	20	7.030229E-4	45.000004	41
TTGGCGT	20	7.030229E-4	45.000004	37
CGAACAC	20	7.030229E-4	45.000004	21
CTCGTTA	20	7.030229E-4	45.000004	29
CTCCGTA	20	7.030229E-4	45.000004	22
CTGTACG	20	7.030229E-4	45.000004	1
GTCGAGT	20	7.030229E-4	45.000004	15
CGAGTCA	20	7.030229E-4	45.000004	17
CCGATTC	20	7.030229E-4	45.000004	34
GCGAATT	20	7.030229E-4	45.000004	20
TTAGATC	20	7.030229E-4	45.000004	12
TAGCGTG	20	7.030229E-4	45.000004	1
ATGTGCG	20	7.030229E-4	45.000004	32
TAGCGAA	20	7.030229E-4	45.000004	15
GTGATAG	20	7.030229E-4	45.000004	9
CACGAAT	20	7.030229E-4	45.000004	42
TGTGCGA	20	7.030229E-4	45.000004	43
CGTTAGA	20	7.030229E-4	45.000004	23
ACGATAT	20	7.030229E-4	45.000004	34