SRR3552903_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552903_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	954201
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	4858	0.5091170518580467	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	2453	0.25707371926879136	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC	2010	0.21064744220557302	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGT	1702	0.1783691276785499	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1499	0.15709478401301194	No Hit
AAACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	1006	0.10542852082527686	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAC	35	1.211647E-7	45.000004	19
ACCGGAC	35	1.211647E-7	45.000004	34
TCCGATC	20	7.032683E-4	45.000004	17
GCACGTA	20	7.032683E-4	45.000004	39
CGATTGT	20	7.032683E-4	45.000004	12
TAACGTG	20	7.032683E-4	45.000004	45
TTATACG	20	7.032683E-4	45.000004	1
TACGCTT	35	1.211647E-7	45.000004	23
CTAACCG	40	6.8121153E-9	45.000004	1
CGTAGAT	20	7.032683E-4	45.000004	34
TTGCGCA	20	7.032683E-4	45.000004	10
AACTCGT	20	7.032683E-4	45.000004	20
CACGTAT	20	7.032683E-4	45.000004	40
CGATATA	20	7.032683E-4	45.000004	21
TGTCGAT	20	7.032683E-4	45.000004	18
TAATGCG	20	7.032683E-4	45.000004	1
TCGAACA	20	7.032683E-4	45.000004	14
GTTATAG	20	7.032683E-4	45.000004	1
ATCGATC	20	7.032683E-4	45.000004	30
TCTAGCG	25	3.890307E-5	45.0	1