SRR3552902_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552902_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	981524
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	4703	0.4791528276435421	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	2224	0.22658641052078196	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCC	1871	0.19062193079333772	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGT	1745	0.17778475106059557	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1588	0.16178921758408352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	20	7.032782E-4	45.000004	31
CGAACTA	20	7.032782E-4	45.000004	13
ATCTACG	20	7.032782E-4	45.000004	1
CAACGAC	20	7.032782E-4	45.000004	10
ACGCAAC	20	7.032782E-4	45.000004	26
CGATTAT	20	7.032782E-4	45.000004	28
TAACGCA	20	7.032782E-4	45.000004	24
TCGATAG	20	7.032782E-4	45.000004	1
GTAATCG	20	7.032782E-4	45.000004	1
ATATACG	20	7.032782E-4	45.000004	1
ATGCGTC	20	7.032782E-4	45.000004	37
ATGCGAA	20	7.032782E-4	45.000004	12
CGCAACA	20	7.032782E-4	45.000004	27
CGATACG	20	7.032782E-4	45.000004	1
CTCGTTA	55	1.8189894E-12	45.0	14
CGTTATG	45	3.8380676E-10	45.0	1
GTTACGG	95	0.0	45.0	2
TCTCGAC	35	1.2116834E-7	45.0	24
GATATCG	25	3.8903887E-5	45.0	36
CGTACTA	25	3.8903887E-5	45.0	34