##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552901_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 489934 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.008084762437388 31.0 31.0 33.0 28.0 34.0 2 31.287148881277886 31.0 31.0 34.0 28.0 34.0 3 31.510468757016252 31.0 31.0 34.0 30.0 34.0 4 35.44929725228296 37.0 35.0 37.0 33.0 37.0 5 34.74712104079325 35.0 35.0 37.0 32.0 37.0 6 34.86855984683651 35.0 35.0 37.0 32.0 37.0 7 34.742530626574194 35.0 35.0 37.0 32.0 37.0 8 35.20594814811791 37.0 35.0 37.0 32.0 37.0 9 36.73227414304784 39.0 37.0 39.0 32.0 39.0 10 36.20397237178885 37.0 35.0 39.0 32.0 39.0 11 36.386460217090466 38.0 35.0 39.0 32.0 39.0 12 36.04210975355864 37.0 35.0 39.0 32.0 39.0 13 35.6412455555238 37.0 35.0 39.0 30.0 39.0 14 36.65744569676732 38.0 35.0 40.0 31.0 41.0 15 36.69674078549355 38.0 35.0 40.0 31.0 41.0 16 36.60661027811909 38.0 35.0 40.0 31.0 41.0 17 36.52536259986039 38.0 35.0 40.0 31.0 41.0 18 36.39975792657786 38.0 35.0 40.0 31.0 41.0 19 36.44026134132353 38.0 35.0 40.0 31.0 41.0 20 36.32169230957639 38.0 35.0 40.0 30.0 41.0 21 36.50033473896484 38.0 35.0 40.0 31.0 41.0 22 36.452667093935105 38.0 35.0 40.0 31.0 41.0 23 36.39377957030947 38.0 35.0 40.0 31.0 41.0 24 35.86281621606175 38.0 34.0 40.0 29.0 41.0 25 36.15705788943001 38.0 34.0 40.0 30.0 41.0 26 35.96983879461315 38.0 34.0 40.0 30.0 41.0 27 35.895216498548784 38.0 34.0 40.0 29.0 41.0 28 36.008915486575745 38.0 34.0 40.0 30.0 41.0 29 35.52353786428376 38.0 34.0 40.0 28.0 41.0 30 35.672325251972715 38.0 34.0 40.0 29.0 41.0 31 35.53176958529108 38.0 34.0 40.0 28.0 41.0 32 35.51946588724196 38.0 34.0 40.0 28.0 41.0 33 35.48204247919107 38.0 34.0 40.0 28.0 41.0 34 35.36719639788216 38.0 34.0 40.0 27.0 41.0 35 35.35813803491899 38.0 34.0 40.0 27.0 41.0 36 35.27293676291092 38.0 34.0 40.0 27.0 41.0 37 35.172088485387825 38.0 34.0 40.0 27.0 41.0 38 35.07721448195063 38.0 34.0 40.0 26.0 41.0 39 35.031663448546134 38.0 34.0 40.0 26.0 41.0 40 34.726673388660515 37.0 33.0 40.0 24.0 41.0 41 34.91528654880045 37.0 34.0 40.0 26.0 41.0 42 34.82205562381872 37.0 34.0 40.0 25.0 41.0 43 34.78848375495475 37.0 34.0 40.0 25.0 41.0 44 34.690666497936455 37.0 34.0 40.0 25.0 41.0 45 34.45163838394559 37.0 33.0 40.0 24.0 41.0 46 34.46133356737846 37.0 33.0 40.0 24.0 41.0 47 34.29626847697853 37.0 33.0 40.0 24.0 41.0 48 34.35318022427511 37.0 33.0 40.0 24.0 41.0 49 34.27943151526532 37.0 33.0 40.0 24.0 41.0 50 34.149563002363585 36.0 33.0 40.0 24.0 41.0 51 32.91161054346096 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 4.0 10 14.0 11 14.0 12 12.0 13 25.0 14 41.0 15 73.0 16 125.0 17 273.0 18 504.0 19 980.0 20 1672.0 21 2451.0 22 3182.0 23 3881.0 24 4263.0 25 4870.0 26 5271.0 27 6127.0 28 7334.0 29 9180.0 30 12294.0 31 16001.0 32 21511.0 33 30273.0 34 46884.0 35 50303.0 36 54904.0 37 73688.0 38 86213.0 39 47565.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.72680810068295 38.07410794106961 18.41982797682953 24.779255981417904 2 19.82777272040724 37.74630868647614 19.582025334024582 22.84389325909204 3 19.898394477623516 32.46784260737161 24.143456057346498 23.49030685765838 4 22.29198218535558 32.03594769907783 18.94500075520376 26.727069360362826 5 16.721435948515513 38.34557307718999 19.073793613017266 25.859197361277232 6 19.972894308212943 35.38027571060592 23.61052713222597 21.036302848955167 7 70.0888282911576 13.340368294504973 9.610069927786192 6.96073348655125 8 72.60896365632922 8.416235656231247 7.42406120008001 11.550739487359522 9 69.0758347042663 11.068633734339727 13.154628990843664 6.700902570550318 10 36.41919115635984 30.49288271481465 15.458000465368805 17.62992566345671 11 27.165291651528573 25.487922863079515 27.65433711479505 19.692448370596857 12 27.996015789881902 23.800552727510237 30.54207301391616 17.661358468691702 13 22.333212228585893 33.3040776920973 23.538068392885574 20.824641686431235 14 15.221642098731666 32.83013630407361 32.580102626068005 19.368118971126723 15 13.475284426065551 31.61364591965448 30.491658060065234 24.419411594214733 16 15.583119358934061 27.97417611351733 34.028052758126606 22.414651769422004 17 14.939155069866553 29.32537852037213 28.770405809762128 26.965060599999184 18 17.008821596378287 28.149097633558807 27.25836541248413 27.583715357578775 19 19.287699975915125 33.2156984410145 28.395049129066365 19.101552454004008 20 22.074197749084572 31.88449872840015 25.60467328252377 20.43663023999151 21 18.685169839202832 31.418313487122756 26.03493531781832 23.861581355856096 22 17.405405626063917 30.729241081451786 27.25999828548335 24.60535500700094 23 20.620532561528695 29.150252891205753 22.717957929027175 27.511256618238374 24 16.033179979344155 34.3411561557271 27.01363857172599 22.61202529320276 25 19.379549082121265 28.599362363093807 27.714141088391496 24.30694746639343 26 20.853829291292296 34.040095196495855 23.267419693264806 21.838655818947043 27 15.636595949658524 31.413823086374897 28.6312033865786 24.318377577387977 28 22.04256083472468 26.93975106851127 28.481795507149943 22.53589258961411 29 17.321516775728977 28.620589712083667 32.390077030783736 21.66781648140362 30 21.565557809827446 27.498397743369512 28.031938995864746 22.90410545093829 31 23.374168765588834 28.552009046116417 22.502622802254997 25.57119938603975 32 21.570456428825107 25.32953418215515 29.502545240787537 23.597464148232213 33 27.285716035221068 24.815587405650557 24.67658909159193 23.222107467536443 34 17.595023003098376 25.26605624431046 27.681279519282185 29.45764123330898 35 22.50221458400519 23.284973078006423 32.39783317753003 21.814979160458346 36 23.06167769536305 23.278645695134447 31.883886401025446 21.775790208477062 37 18.39064037196847 26.57643682618475 31.181751011360713 23.851171790486063 38 23.082905044352913 25.133793531373616 28.995129956279825 22.78817146799365 39 19.97820114546041 23.436830266933914 31.34707940253177 25.237889185073907 40 25.372805316634484 24.866614686876193 26.223532149228262 23.537047847261057 41 18.904383039348158 20.55011491343732 33.00689480623921 27.538607240975317 42 23.885053905219884 23.133115889078937 28.711826490915104 24.270003714786075 43 21.683736993146017 22.510583058126198 30.123445198741056 25.682234749986733 44 20.653598239762907 22.25667130674744 28.65222662644356 28.43750382704609 45 24.254287312168575 26.607053194920134 26.644609273902198 22.49405021900909 46 18.78232578265644 24.17305188045737 34.8722480987235 22.172374238162693 47 21.82579694407818 24.40328697334743 26.539084856327587 27.2318312262468 48 20.754224038339856 20.763613058085376 35.439263247702755 23.042899655872016 49 21.41390473002486 19.93942041172893 32.67378871439826 25.972886143847944 50 20.448876787485663 21.952344601517755 27.625353619058895 29.97342499193769 51 17.757902084770603 22.83756587622006 35.016349140904694 24.388182898104642 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5188.0 1 4185.5 2 3183.0 3 2257.5 4 1332.0 5 1630.0 6 1928.0 7 1783.5 8 1639.0 9 1513.0 10 1387.0 11 1531.5 12 1676.0 13 1656.0 14 1636.0 15 1660.5 16 1685.0 17 1851.5 18 2018.0 19 1846.5 20 1675.0 21 1908.5 22 2142.0 23 2350.0 24 2558.0 25 2882.5 26 3763.0 27 4319.0 28 5291.0 29 6263.0 30 6866.5 31 7470.0 32 7776.5 33 8083.0 34 8860.0 35 9637.0 36 11252.5 37 12868.0 38 13801.0 39 14734.0 40 16940.5 41 19147.0 42 24249.0 43 29351.0 44 42125.5 45 54900.0 46 54523.0 47 54146.0 48 54782.0 49 55418.0 50 49154.0 51 42890.0 52 38674.0 53 34458.0 54 29356.5 55 24255.0 56 21447.0 57 18639.0 58 17214.5 59 15790.0 60 14091.5 61 12393.0 62 11159.5 63 9926.0 64 8271.0 65 6616.0 66 5669.0 67 4722.0 68 4048.0 69 3374.0 70 3146.5 71 2919.0 72 2799.5 73 2680.0 74 2100.0 75 1217.0 76 914.0 77 678.5 78 443.0 79 374.5 80 306.0 81 317.5 82 329.0 83 215.5 84 102.0 85 65.5 86 29.0 87 26.5 88 24.0 89 16.5 90 9.0 91 7.0 92 5.0 93 2.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 489934.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.26074266681881 #Duplication Level Percentage of deduplicated Percentage of total 1 78.29568403344312 25.25876914525463 2 9.778128853938908 6.30899397439838 3 3.4557090448219823 3.3445122067920052 4 1.6068696399081488 2.0735523180880233 5 0.8665378262565377 1.3977576911963356 6 0.5622511511486772 1.088318382079807 7 0.41270411164224935 0.9319898800260067 8 0.3387705100657054 0.8743190598669338 9 0.23798123375773114 0.6909706207611196 >10 3.6186320020383094 29.554216526534965 >50 0.7497819600936966 15.273646837683428 >100 0.06423068530064746 4.02465015399997 >500 0.005087579033714651 1.2159913066604386 >1k 0.005087579033714651 2.933807269317407 >5k 0.0025437895168573255 5.028504627340535 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCC 6559 1.338751750235746 No Hit CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT 6321 1.290173778508942 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGT 6235 1.2726203937673237 No Hit AATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCT 5395 1.1011687288491918 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4402 0.8984883678209719 No Hit AAACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCT 2325 0.47455371539840063 No Hit AAAAACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTT 1794 0.366171770075153 No Hit AATGACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTT 1439 0.293713030734752 No Hit AATGATCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT 1199 0.24472684075814294 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTAT 1084 0.22125429139435107 No Hit AACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG 1034 0.21104883514922418 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1023 0.2088036347752963 No Hit CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC 952 0.19431188690721607 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT 910 0.18573930366130947 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 883 0.18022835728894096 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTCTGCTTC 856 0.17471741091657245 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 711 0.14512158780570444 No Hit GAAAAACTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCT 557 0.1136887825707136 No Hit ACCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTG 543 0.11083125482207808 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 515 0.10511619932480701 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.082182498050758E-4 0.0 0.0 1.526532145146081 0.0 2 4.082182498050758E-4 0.0 0.0 2.016802263161977 0.0 3 4.082182498050758E-4 0.0 0.0 2.7268979086979064 0.0 4 6.123273747076136E-4 0.0 0.0 6.468014059036523 0.0 5 6.123273747076136E-4 0.0 0.0 6.953793776304564 0.0 6 6.123273747076136E-4 0.0 0.0 9.341054101164646 0.0 7 6.123273747076136E-4 0.0 0.0 11.143541783178959 0.0 8 6.123273747076136E-4 0.0 0.0 11.930382459678242 0.0 9 6.123273747076136E-4 0.0 0.0 14.551755950801537 0.0 10 6.123273747076136E-4 0.0 0.0 16.309747843587097 0.0 11 6.123273747076136E-4 0.0 0.0 19.750415362069177 0.0 12 6.123273747076136E-4 0.0 0.0 20.77443084170521 0.0 13 6.123273747076136E-4 0.0 0.0 21.206733968248784 0.0 14 6.123273747076136E-4 0.0 0.0 21.851718802940805 0.0 15 6.123273747076136E-4 0.0 0.0 22.244220650128383 0.0 16 6.123273747076136E-4 0.0 0.0 22.97003269828181 0.0 17 6.123273747076136E-4 0.0 0.0 23.785856870517254 0.0 18 6.123273747076136E-4 0.0 0.0 25.055007409161234 0.0 19 6.123273747076136E-4 0.0 0.0 25.60304040952455 0.0 20 6.123273747076136E-4 0.0 0.0 26.011462768454525 0.0 21 6.123273747076136E-4 0.0 0.0 26.531124600456387 0.0 22 6.123273747076136E-4 0.0 0.0 27.05548094233101 0.0 23 6.123273747076136E-4 0.0 0.0 27.5696318279605 0.0 24 6.123273747076136E-4 0.0 0.0 27.951111782403345 0.0 25 6.123273747076136E-4 0.0 0.0 28.24911110476105 0.0 26 6.123273747076136E-4 0.0 0.0 28.54017071687207 0.0 27 6.123273747076136E-4 0.0 0.0 28.833679638481918 0.0 28 6.123273747076136E-4 0.0 0.0 29.139230998461016 0.0 29 6.123273747076136E-4 0.0 0.0 29.466622034804686 0.0 30 6.123273747076136E-4 0.0 0.0 29.874840284609764 0.0 31 6.123273747076136E-4 0.0 0.0 30.200394338829312 0.0 32 6.123273747076136E-4 0.0 0.0 30.497373115562503 0.0 33 6.123273747076136E-4 0.0 0.0 30.81945731465871 0.0 34 6.123273747076136E-4 0.0 0.0 31.095004633277135 0.0 35 6.123273747076136E-4 0.0 0.0 31.466075022349948 0.0 36 6.123273747076136E-4 0.0 0.0 31.768972963705316 0.0 37 6.123273747076136E-4 0.0 0.0 32.06472708568909 0.0 38 6.123273747076136E-4 0.0 0.0 32.3627264080468 0.0 39 6.123273747076136E-4 0.0 0.0 32.650112055909574 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGGTACC 20 7.0293184E-4 45.000004 18 ACTATCG 20 7.0293184E-4 45.000004 1 CTCCGTA 20 7.0293184E-4 45.000004 43 GGTCGTT 20 7.0293184E-4 45.000004 26 TTGGACA 20 7.0293184E-4 45.000004 29 GGTAAGC 20 7.0293184E-4 45.000004 19 CAACGTT 20 7.0293184E-4 45.000004 34 CGGCCGT 20 7.0293184E-4 45.000004 41 TGGACGG 20 7.0293184E-4 45.000004 2 TAGGTAC 20 7.0293184E-4 45.000004 17 GGCAACG 20 7.0293184E-4 45.000004 1 CCTGTTA 20 7.0293184E-4 45.000004 23 TGTTGCG 20 7.0293184E-4 45.000004 12 CCACTAG 20 7.0293184E-4 45.000004 1 CGCTATG 20 7.0293184E-4 45.000004 1 CGCTAGT 20 7.0293184E-4 45.000004 22 GTCGTTG 20 7.0293184E-4 45.000004 27 GTACTGG 75 0.0 45.000004 2 CGTACAT 30 2.162942E-6 45.000004 35 TCGTACA 30 2.162942E-6 45.000004 34 >>END_MODULE