SRR3552899_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552899_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504381
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCTGCT	5731	1.136244228073619	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4556	0.9032854132094587	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCT	1970	0.39057775768714525	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTT	1589	0.315039622824809	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCT	1504	0.29818728302612507	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCC	1437	0.28490367400833894	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGT	1125	0.22304567380611087	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1052	0.2085724878613588	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	897	0.17784175058140572	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCTGC	833	0.16515293002710255	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCT	796	0.15781720564414597	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	730	0.14473185944752082	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCT	537	0.10646713496345024	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	526	0.1042862439306794	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAGG	25	3.887681E-5	45.000004	2
CAGTTAG	25	3.887681E-5	45.000004	1
TTATCCG	25	3.887681E-5	45.000004	1
CCGTAGT	50	2.1827873E-11	45.000004	27
CGTAGTG	50	2.1827873E-11	45.000004	28
ATGGTCG	25	3.887681E-5	45.000004	44
CGTAATG	25	3.887681E-5	45.000004	1
GCAATAC	25	3.887681E-5	45.000004	34
GATTAGG	85	0.0	45.000004	2
TATCGCG	25	3.887681E-5	45.000004	1
TGCGTCT	25	3.887681E-5	45.000004	11
AGGTCGA	25	3.887681E-5	45.000004	10
CGGGTAT	110	0.0	45.0	6
ACGCATG	45	3.8380676E-10	45.0	1
GAGTACG	35	1.2101191E-7	45.0	1
CGACATG	35	1.2101191E-7	45.0	1
TCGATCG	20	7.029517E-4	45.0	1
GACCCGT	20	7.029517E-4	45.0	15
GCACCGT	55	1.8189894E-12	45.0	24
CTACGAA	40	6.8012014E-9	45.0	10