SRR3552895_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552895_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	305334
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGCT	4400	1.4410448885482783	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3741	1.2252156654679793	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCC	3632	1.1895170534562152	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGT	3461	1.133512808923998	No Hit
AATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCT	3387	1.1092770539802315	No Hit
AAACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCT	1288	0.4218331401023142	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	948	0.3104796714417654	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTT	870	0.28493387569022777	No Hit
AATGACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTT	834	0.2731435084202873	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCT	759	0.24858024327457803	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	743	0.24334008004349336	No Hit
AACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTG	706	0.2312222025716101	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGCTTTCATC	676	0.2213968965133264	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	607	0.19879869257927388	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCT	489	0.16015248875002455	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTAT	488	0.15982497854808178	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	395	0.12936652976740226	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	368	0.1205237543149469	No Hit
ACCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTG	333	0.10906089724694924	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTCTGC	317	0.1038207340158646	No Hit
AATGCTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCTTC	314	0.10283820341003623	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCCGCTTTCATCGTATGCCGTCT	312	0.10218318300615065	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	309	0.10120065240032228	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGAGC	20	7.025139E-4	45.000004	4
ATGGGAC	80	0.0	45.000004	5
AGGTAAT	20	7.025139E-4	45.000004	6
ATTAGTT	20	7.025139E-4	45.000004	29
CAAGTCT	20	7.025139E-4	45.000004	39
CGAAATC	20	7.025139E-4	45.000004	22
GGATGTT	20	7.025139E-4	45.000004	8
ACGCATG	20	7.025139E-4	45.000004	1
TAGACGA	20	7.025139E-4	45.000004	17
TTTCGCG	20	7.025139E-4	45.000004	1
TGGCGAT	20	7.025139E-4	45.000004	29
ACCGAAC	20	7.025139E-4	45.000004	10
CAATTCG	20	7.025139E-4	45.000004	41
ACGATCT	20	7.025139E-4	45.000004	20
CTAACGG	20	7.025139E-4	45.000004	2
CTAGTCA	20	7.025139E-4	45.000004	31
CGTAGTG	20	7.025139E-4	45.000004	28
TTCCACG	20	7.025139E-4	45.000004	1
GTGTCTA	20	7.025139E-4	45.000004	34
TCAGACA	20	7.025139E-4	45.000004	24

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content