##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3552892_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 333308 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.217867557934404 31.0 31.0 33.0 30.0 34.0 2 31.488299110732417 31.0 31.0 34.0 30.0 34.0 3 31.669848908517046 31.0 31.0 34.0 30.0 34.0 4 35.57940103447862 37.0 35.0 37.0 35.0 37.0 5 34.90529180217697 35.0 35.0 37.0 32.0 37.0 6 34.987975086106545 35.0 35.0 37.0 32.0 37.0 7 34.9015235157872 36.0 35.0 37.0 32.0 37.0 8 35.27116360843424 37.0 35.0 37.0 33.0 37.0 9 36.81895124029426 39.0 37.0 39.0 33.0 39.0 10 36.33311831699209 38.0 35.0 39.0 32.0 39.0 11 36.49525063904857 38.0 35.0 39.0 32.0 39.0 12 36.126657625979576 37.0 35.0 39.0 32.0 39.0 13 35.804997179785666 37.0 35.0 39.0 30.0 39.0 14 36.85136570379349 39.0 35.0 40.0 31.0 41.0 15 36.841563958860874 38.0 35.0 40.0 32.0 41.0 16 36.735814921934065 38.0 35.0 40.0 31.0 41.0 17 36.63258607654182 38.0 35.0 40.0 31.0 41.0 18 36.49624071429429 38.0 35.0 40.0 31.0 41.0 19 36.570157331957226 38.0 35.0 40.0 31.0 41.0 20 36.39212680163693 38.0 35.0 40.0 30.0 41.0 21 36.50298522687724 38.0 35.0 40.0 31.0 41.0 22 36.49173737204028 38.0 35.0 40.0 31.0 41.0 23 36.39309887551454 38.0 35.0 40.0 31.0 41.0 24 35.97012372940343 38.0 34.0 40.0 30.0 41.0 25 36.1439929434637 38.0 35.0 40.0 30.0 41.0 26 36.00804061108644 38.0 34.0 40.0 30.0 41.0 27 35.86285657709986 38.0 34.0 40.0 29.0 41.0 28 35.84649933394938 38.0 34.0 40.0 29.0 41.0 29 35.46740252259172 38.0 34.0 40.0 27.0 41.0 30 35.509687736267956 38.0 34.0 40.0 28.0 41.0 31 35.47228089334789 38.0 34.0 40.0 28.0 41.0 32 35.35344186158148 38.0 34.0 40.0 27.0 41.0 33 35.19274964897332 38.0 34.0 40.0 27.0 41.0 34 35.20390749696977 38.0 34.0 40.0 27.0 41.0 35 35.07727387281433 38.0 34.0 40.0 26.0 41.0 36 34.90081846220313 37.0 34.0 40.0 25.0 41.0 37 34.77158364035667 37.0 34.0 40.0 25.0 41.0 38 34.704450538240906 37.0 33.0 40.0 25.0 41.0 39 34.663527428084535 37.0 33.0 40.0 25.0 41.0 40 34.43521307619379 37.0 33.0 40.0 24.0 41.0 41 34.52467987567055 37.0 33.0 40.0 25.0 41.0 42 34.499645973093955 37.0 33.0 40.0 24.0 41.0 43 34.408103015829205 37.0 33.0 40.0 24.0 41.0 44 34.26966049419756 37.0 33.0 40.0 23.0 41.0 45 34.14562206727711 37.0 33.0 40.0 23.0 41.0 46 34.106322080478115 36.0 33.0 40.0 23.0 41.0 47 33.99575167712746 36.0 33.0 40.0 23.0 41.0 48 33.994398574291644 36.0 33.0 40.0 23.0 41.0 49 33.81691408547049 36.0 33.0 39.0 23.0 41.0 50 33.714033266528254 36.0 33.0 39.0 23.0 40.0 51 32.391967789552005 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 9.0 11 6.0 12 7.0 13 15.0 14 24.0 15 38.0 16 79.0 17 193.0 18 365.0 19 716.0 20 1201.0 21 1839.0 22 2485.0 23 2948.0 24 3343.0 25 3464.0 26 3829.0 27 4351.0 28 5047.0 29 6327.0 30 8090.0 31 10825.0 32 14481.0 33 20595.0 34 32310.0 35 34948.0 36 37021.0 37 50158.0 38 57463.0 39 31128.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.29656653905697 34.640632688084295 19.529684256003456 26.53311651685528 2 22.108680259699735 35.821822458506844 20.07152543593313 21.997971845860285 3 20.25363927658502 34.210700013201 20.93829131013957 24.597369400074406 4 20.852484788843952 34.20889987639061 20.088926758433644 24.8496885763318 5 16.640464675315325 38.232805693232685 18.277089058768468 26.849640572683526 6 19.419275864965737 37.091818978242344 22.083178321552438 21.405726835239477 7 71.73425180313704 12.41974390053644 8.950880266900283 6.895124029426237 8 74.12213328212944 9.461819098251468 7.548873714402295 8.867173905216797 9 68.6428168540809 12.613858653257648 12.501950148211263 6.241374344450178 10 36.804397134182196 31.743912537352838 13.996963769246463 17.4547265592185 11 29.801864941735573 27.63600033602554 23.988623135358285 18.573511586880603 12 29.82916701669327 24.075329725059106 28.62667562734768 17.46882763089995 13 23.535888727543295 32.20774778883195 23.332473267968364 20.92389021565639 14 16.466151427508493 33.79126813637836 30.354806965329367 19.387773470783777 15 15.477876318600215 30.93235085866526 31.470891787775873 22.118881034958658 16 16.534256603501866 29.127713706241675 30.179893671919068 24.158136018337395 17 15.71699449158136 29.47003972301895 28.155339805825243 26.657625979574444 18 19.94881611002436 28.650077405882847 25.652249570967395 25.748856913125394 19 21.65774598869514 33.44024145835083 25.605446013897055 19.29656653905697 20 23.06275276921046 31.057760389789625 23.881214972337897 21.998271868662016 21 19.448978122337298 32.894800004800366 24.55986654985779 23.09635532300455 22 18.636816398046253 30.54052107960205 24.995499657974005 25.827162864377694 23 21.331921226013176 30.929050607846197 21.40062644761002 26.33840171853061 24 17.70734575827763 31.159168096775353 26.1487873078354 24.984698837111623 25 18.370696172909142 29.486540977114263 26.83493945539861 25.307823394577987 26 21.527836115544783 32.597777431084765 23.303971101803736 22.57041535156672 27 17.44032546473532 30.200895268040373 26.609622331297178 25.749156935927132 28 21.656245874686476 27.67500330025082 29.768862433544953 20.899888391517756 29 21.584840447874036 29.84986859001284 27.286473772006676 21.278817190106448 30 20.085326484812846 29.05750837063617 28.85709313907857 22.000072005472415 31 28.934499021925664 29.02390581684208 22.122481308579452 19.9191138526528 32 26.22709325908769 27.19586688588333 25.467735547901643 21.109304307127342 33 24.41165528580172 29.01160488197103 25.647749228941404 20.92899060328585 34 23.562290734095793 26.27809713538229 27.59399714378293 22.565614986738993 35 24.99189938435321 25.951972349898593 28.99780383309131 20.05832443265688 36 28.30415111548478 25.477336277557093 28.75148511286858 17.467027494089553 37 24.61297058576452 29.435837123621393 25.909969157655983 20.041223132958105 38 25.747356799116734 28.373756405486816 27.081858221224813 18.797028574171637 39 25.54724159036087 25.38012888979562 27.935423092155006 21.137206427688504 40 26.65642588836752 26.962149123333372 23.51938747344798 22.862037514851128 41 24.136234353810888 22.960444993819532 28.938399318348196 23.964921334021387 42 28.25314723919018 23.701501314099872 25.261619883111113 22.783731563598835 43 24.177937523251767 24.468059572527512 27.082158244026544 24.271844660194176 44 22.978446361923506 23.462383141118725 26.65672591116925 26.902444585788523 45 25.70805381208972 25.890767698345073 26.72033074513663 21.680847744428576 46 21.781955428612573 24.190838503726283 32.652081558198425 21.37512450946272 47 22.949644172957147 24.888091494953617 26.17998967921562 25.982274652873617 48 24.305447213988263 21.522435705113587 32.95150431432789 21.22061276657026 49 23.168960841023917 21.72945143830931 30.505418411799294 24.596169308867474 50 21.007596577339875 22.548513687040213 27.458686860201375 28.98520287541853 51 20.615166752673204 23.09665534580628 32.31125565542981 23.976922246090705 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4191.0 1 3315.0 2 2439.0 3 1715.5 4 992.0 5 1112.0 6 1232.0 7 1221.0 8 1210.0 9 1226.0 10 1242.0 11 1286.0 12 1330.0 13 1330.5 14 1331.0 15 1334.0 16 1337.0 17 1344.0 18 1351.0 19 1338.5 20 1326.0 21 1289.5 22 1253.0 23 1586.5 24 1920.0 25 1850.5 26 2181.5 27 2582.0 28 3059.0 29 3536.0 30 3485.0 31 3434.0 32 4406.0 33 5378.0 34 5560.5 35 5743.0 36 6264.5 37 6786.0 38 7624.0 39 8462.0 40 10399.5 41 12337.0 42 15249.0 43 18161.0 44 24404.0 45 30647.0 46 32739.5 47 34832.0 48 36859.5 49 38887.0 50 35469.5 51 32052.0 52 27543.5 53 23035.0 54 20711.5 55 18388.0 56 15710.5 57 13033.0 58 12341.5 59 11650.0 60 10837.0 61 10024.0 62 9499.5 63 8975.0 64 7543.0 65 6111.0 66 5189.5 67 4268.0 68 4029.5 69 3791.0 70 3136.0 71 2481.0 72 2459.5 73 2438.0 74 1754.0 75 1013.0 76 956.0 77 793.0 78 630.0 79 515.0 80 400.0 81 280.0 82 160.0 83 108.5 84 57.0 85 52.0 86 47.0 87 28.5 88 10.0 89 6.5 90 3.0 91 5.0 92 7.0 93 3.5 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 333308.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.57316567206625 #Duplication Level Percentage of deduplicated Percentage of total 1 79.43161397600994 29.844971915202343 2 9.286852064990859 6.9787286241974416 3 3.1683622909884046 3.571362038053041 4 1.419724511405795 2.13374177102973 5 0.7991173534096894 1.5012684355542687 6 0.5923428662702025 1.3353717989422142 7 0.44358501114469645 1.1666825179369524 8 0.33087717049110993 0.9945682195173589 9 0.28451960128321424 0.9621271904367998 >10 3.8322113101334216 33.85091480300474 >50 0.354849156963962 8.285257992091235 >100 0.047153378965931886 3.7037574598402845 >500 0.003996049064909482 1.118874679371242 >1k 0.004795258877891379 4.5523725548223375 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT 4912 1.4737120021121606 Illumina Single End Adapter 2 (95% over 22bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3622 1.0866825878766786 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCC 1813 0.5439413395418052 No Hit AATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT 1800 0.540041043119277 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGT 1745 0.5235397890239658 No Hit AAACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT 1268 0.3804289125973574 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 881 0.26432008832671283 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTT 830 0.24901892543833332 No Hit CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC 810 0.24301846940367466 Illumina Single End Adapter 2 (95% over 21bp) GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 616 0.18481404586748593 No Hit AACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG 589 0.17671343022069677 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCT 452 0.13561030638328514 No Hit GCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC 386 0.11580880146891163 Illumina Single End Adapter 2 (95% over 21bp) AATGACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTT 378 0.11340861905504819 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCT 376 0.11280857345158232 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTGTAGGTC 367 0.11010836823598592 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 366 0.10980834543425301 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 365 0.10950832263252007 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 362 0.10860825422732129 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 349 0.10470795780479315 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 345 0.10350786659786143 No Hit ACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG 340 0.10200775258919678 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.000456034658634E-4 0.0 0.0 1.7158304031106364 0.0 2 6.000456034658634E-4 0.0 0.0 2.327276873042351 0.0 3 6.000456034658634E-4 0.0 0.0 3.0053284049587767 0.0 4 6.000456034658634E-4 0.0 0.0 5.842644040947112 0.0 5 6.000456034658634E-4 0.0 0.0 6.32958104815966 0.0 6 6.000456034658634E-4 0.0 0.0 8.414439497401803 0.0 7 6.000456034658634E-4 0.0 0.0 9.97785831723211 0.0 8 6.000456034658634E-4 0.0 0.0 10.928030530320305 0.0 9 6.000456034658634E-4 0.0 0.0 12.790572083478345 0.0 10 6.000456034658634E-4 0.0 0.0 14.81032558474444 0.0 11 6.000456034658634E-4 0.0 0.0 17.263011988911156 0.0 12 6.000456034658634E-4 0.0 0.0 18.46340321864462 0.0 13 6.000456034658634E-4 0.0 0.0 18.998043851332703 0.0 14 6.000456034658634E-4 0.0 0.0 19.561486672987147 0.0 15 6.000456034658634E-4 0.0 0.0 19.94041547157584 0.0 16 6.000456034658634E-4 0.0 0.0 20.677871518235385 0.0 17 6.000456034658634E-4 0.0 0.0 21.50113408619055 0.0 18 6.000456034658634E-4 0.0 0.0 22.83143518907437 0.0 19 6.000456034658634E-4 0.0 0.0 23.32077237870078 0.0 20 6.000456034658634E-4 0.0 0.0 23.801408907076937 0.0 21 6.000456034658634E-4 0.0 0.0 24.313847852436787 0.0 22 6.000456034658634E-4 0.0 0.0 24.815185954132513 0.0 23 6.000456034658634E-4 0.0 0.0 25.32732487669063 0.0 24 6.000456034658634E-4 0.0 0.0 25.70715374368452 0.0 25 6.000456034658634E-4 0.0 0.0 26.016477252271173 0.0 26 6.000456034658634E-4 0.0 0.0 26.312599757581577 0.0 27 6.000456034658634E-4 0.0 0.0 26.648925318324192 0.0 28 6.000456034658634E-4 0.0 0.0 26.958248826910847 0.0 29 6.000456034658634E-4 0.0 0.0 27.26367203907497 0.0 30 6.000456034658634E-4 0.0 0.0 27.693004668354796 0.0 31 6.000456034658634E-4 0.0 0.0 28.017329317028093 0.0 32 6.000456034658634E-4 0.0 0.0 28.329353030830344 0.0 33 6.000456034658634E-4 0.0 0.0 28.664478500366027 0.0 34 6.000456034658634E-4 0.0 0.0 28.934198999123932 0.0 35 6.000456034658634E-4 0.0 0.0 29.266324240642287 0.0 36 6.000456034658634E-4 0.0 0.0 29.563646837159624 0.0 37 6.000456034658634E-4 0.0 0.0 29.855569023245767 0.0 38 6.000456034658634E-4 0.0 0.0 30.148991323340574 0.0 39 6.000456034658634E-4 0.0 0.0 30.440013441021517 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACCATT 25 3.884826E-5 45.000004 9 CTACGAA 25 3.884826E-5 45.000004 10 CGAATAT 25 3.884826E-5 45.000004 13 CTATTAC 25 3.884826E-5 45.000004 32 TAAGGTT 25 3.884826E-5 45.000004 16 GCTACGA 25 3.884826E-5 45.000004 9 TCGACGT 25 3.884826E-5 45.000004 26 GTAGTGC 25 3.884826E-5 45.000004 29 CTTACAG 25 3.884826E-5 45.000004 1 CATATAG 20 7.026071E-4 45.0 1 AACCACG 40 6.7902874E-9 45.0 1 CGCGCCA 20 7.026071E-4 45.0 32 CGACAAT 35 1.2084638E-7 45.0 20 ATCACGC 20 7.026071E-4 45.0 42 ATCGTTG 70 0.0 45.0 23 ATCCGTT 20 7.026071E-4 45.0 10 CGCCTGC 40 6.7902874E-9 45.0 19 GCCGATG 20 7.026071E-4 45.0 9 ATATCGC 20 7.026071E-4 45.0 33 CCCGTAG 20 7.026071E-4 45.0 23 >>END_MODULE