SRR3552889_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552889_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444014
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCC	7153	1.6109852392041693	No Hit
CTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGCT	6006	1.352660051259645	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGT	5919	1.3330660744931466	No Hit
AATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT	5505	1.2398257712594647	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4003	0.9015481493826771	No Hit
AATGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT	1311	0.29526096023999243	No Hit
AAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCT	1295	0.29165747025994676	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT	1194	0.26891043976090845	No Hit
AACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTG	1057	0.23805555680676735	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTAT	1027	0.23129901309418172	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	952	0.2144076538127176	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTT	875	0.1970658582837478	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCATTCTCGTC	798	0.179724062754778	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	708	0.15945443161702108	No Hit
CCTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCTTCTGC	697	0.1569770322557397	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	526	0.11846473309400155	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCATTCTCGTCGTATGCCGTCT	480	0.10810469940137023	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	445	0.10022206507002032	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTT	20	7.0286036E-4	45.000004	19
CTCGTCA	20	7.0286036E-4	45.000004	36
ACGTTTG	20	7.0286036E-4	45.000004	1
GAGTCTA	20	7.0286036E-4	45.000004	9
ATTACCG	20	7.0286036E-4	45.000004	25
TGCGGTA	20	7.0286036E-4	45.000004	12
CATTCGG	20	7.0286036E-4	45.000004	2
ATCACGC	20	7.0286036E-4	45.000004	42
ACGGGCG	65	0.0	45.000004	5
TGCATCA	20	7.0286036E-4	45.000004	13
GCATTAC	20	7.0286036E-4	45.000004	23
CCACTAG	20	7.0286036E-4	45.000004	1
TCTACCG	20	7.0286036E-4	45.000004	16
CTAAACA	20	7.0286036E-4	45.000004	26
TGCGAAC	20	7.0286036E-4	45.000004	14
TCTAACG	20	7.0286036E-4	45.000004	1
GGTATGC	80	0.0	45.000004	8
GTACTAG	20	7.0286036E-4	45.000004	1
ACAGACG	20	7.0286036E-4	45.000004	1
TTACGCG	20	7.0286036E-4	45.000004	1