SRR3552884_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552884_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	532571
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGCT	6576	1.2347649421391702	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3178	0.5967279480106877	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCC	2430	0.45627719121018606	No Hit
AATCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	2331	0.4376881204571785	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGT	2165	0.40651856747738796	No Hit
AAACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	1149	0.21574588176975465	No Hit
CCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	1109	0.2082351461119738	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	804	0.15096578672139488	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	754	0.14157736714916883	No Hit
ACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTG	672	0.12618035905071812	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTT	669	0.12561705387638455	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	652	0.1224249912218277	No Hit
AACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	633	0.11885739178438179	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	611	0.11472648717260235	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	606	0.11378764521537973	No Hit
AGCCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	569	0.10684021473193245	No Hit
TACCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCT	569	0.10684021473193245	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGCG	20	7.029872E-4	45.000004	1
TAGCGCG	20	7.029872E-4	45.000004	1
ATTAACG	20	7.029872E-4	45.000004	1
TTGTACG	20	7.029872E-4	45.000004	1
CCTGTCG	20	7.029872E-4	45.000004	13
CGACACG	30	2.1632986E-6	45.000004	1
TAGCACG	30	2.1632986E-6	45.000004	1
ATTCACG	20	7.029872E-4	45.000004	1
CGGTGAC	20	7.029872E-4	45.000004	27
TACTCGC	30	2.1632986E-6	45.000004	45
CGAGACG	20	7.029872E-4	45.000004	1
GCGGAGT	20	7.029872E-4	45.000004	25
CAGTCCC	20	7.029872E-4	45.000004	31
AGGATCC	20	7.029872E-4	45.000004	14
CTCTACT	40	6.8030204E-9	45.000004	23
GCCGTAG	20	7.029872E-4	45.000004	1
GTTATGA	20	7.029872E-4	45.000004	10
AGTCGGT	20	7.029872E-4	45.000004	30
AACGTGT	25	3.8879767E-5	45.0	43
CGGGTCA	25	3.8879767E-5	45.0	6