SRR3552883_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552883_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551556
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	5854	1.061360949749436	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC	4418	0.8010066067634112	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGT	3908	0.7085409278477616	No Hit
AATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT	3683	0.6677472459732103	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3251	0.5894233767740719	No Hit
AAACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT	1181	0.21412150352820022	No Hit
AATGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTT	942	0.170789548114788	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCT	791	0.1434124549456447	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	785	0.14232462342899	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	756	0.13706677109849227	No Hit
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	749	0.13579763432906178	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTT	713	0.12927064522913356	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTAT	689	0.12491931916251478	No Hit
AACTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTG	682	0.12365018239308428	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	625	0.11331578298486462	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	558	0.10116833104888716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.03009E-4	45.000004	1
TCGTTAC	20	7.03009E-4	45.000004	14
GCTCTAG	30	2.1634405E-6	45.000004	1
CAAGGCA	20	7.03009E-4	45.000004	19
TCGCTAG	20	7.03009E-4	45.000004	15
TACCTAG	20	7.03009E-4	45.000004	1
ACCGTAA	20	7.03009E-4	45.000004	10
CGCCGAA	20	7.03009E-4	45.000004	43
GATACTA	25	3.8881582E-5	45.0	9
TTCAACG	35	1.2103919E-7	45.0	1
TCTAGCG	25	3.8881582E-5	45.0	1
CACTACG	35	1.2103919E-7	45.0	1
CGCTAAG	35	1.2103919E-7	45.0	1
CATACCG	25	3.8881582E-5	45.0	1
CGTAACG	45	3.8380676E-10	45.0	1
GCAATAG	35	1.2103919E-7	45.0	1
TGTACGA	25	3.8881582E-5	45.0	16
CTCGATC	155	0.0	43.54839	16
TCGATCA	160	0.0	42.187504	17
ACGGGCT	305	0.0	42.049183	5