SRR3552880_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552880_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	644375
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGCT	7033	1.0914451988360816	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3888	0.6033753637245393	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCC	2028	0.3147235693501455	No Hit
AATCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCT	1871	0.2903588748787585	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGT	1804	0.27996120271580993	No Hit
AAACTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCT	1695	0.26304558680892337	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTT	1072	0.1663627546071775	No Hit
CCTGTCTCTTATACACATCTGACGCCCTCTAGATCGTATGCCGTCTTCTGC	1050	0.1629485935984481	Illumina Single End Adapter 1 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	883	0.13703200775945684	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	839	0.13020368574199806	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	832	0.1291173617846751	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	704	0.10925315227934043	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACAG	30	2.1640099E-6	45.000004	1
TCCCGCG	30	2.1640099E-6	45.000004	15
GTTCACG	30	2.1640099E-6	45.000004	1
CGAGACG	30	2.1640099E-6	45.000004	1
ATGCACG	30	2.1640099E-6	45.000004	1
GTACCTA	20	7.030978E-4	45.0	21
TACCCCG	25	3.8888917E-5	45.0	1
CTATCCG	20	7.030978E-4	45.0	1
ATTCGCT	20	7.030978E-4	45.0	23
CGATTGA	20	7.030978E-4	45.0	15
TAACGCG	20	7.030978E-4	45.0	1
TAGCCGT	20	7.030978E-4	45.0	44
AGTATTC	25	3.8888917E-5	45.0	19
ATCGTAG	20	7.030978E-4	45.0	12
GTAATCG	20	7.030978E-4	45.0	35
AATGCGC	20	7.030978E-4	45.0	34
ACGATAG	40	6.8066583E-9	45.0	1
ATTCACG	35	1.2108103E-7	45.0	1
CTAAACG	20	7.030978E-4	45.0	1
ACGTGTA	25	3.8888917E-5	45.0	28