SRR3552879_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3552879_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	321395
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3627	1.1285178674217085	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCC	2136	0.6646027473980616	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGT	2069	0.643756125639789	No Hit
AATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	1985	0.6176200625398652	No Hit
CTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGCT	1803	0.5609919258233638	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	834	0.2594937693492431	No Hit
GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	682	0.21219994088271443	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	679	0.21126651005771713	No Hit
AAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCT	672	0.20908850479939017	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	482	0.14997121921622925	No Hit
AACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTG	454	0.14125919818292135	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTT	437	0.13596975684127008	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCT	419	0.1303691718912864	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	415	0.1291245974579567	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGCTCATTCGTAT	391	0.12165715085797849	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCTCATTCGTATGCCGTCTTCTGC	364	0.11325627343300301	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGCTCATTC	344	0.1070334012663545	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	332	0.10329967796636537	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGG	35	1.2082819E-7	45.0	2
AGATCCG	20	7.025694E-4	45.0	17
CGACGGT	20	7.025694E-4	45.0	28
ACGTTAG	20	7.025694E-4	45.0	1
ATTACGG	35	1.2082819E-7	45.0	2
ACCGAAC	20	7.025694E-4	45.0	10
CATTACG	20	7.025694E-4	45.0	1
CCACTCG	20	7.025694E-4	45.0	31
TAACATA	20	7.025694E-4	45.0	14
CGCTACG	20	7.025694E-4	45.0	1
CCATATG	20	7.025694E-4	45.0	1
ACGCTAT	20	7.025694E-4	45.0	37
TACTCGA	20	7.025694E-4	45.0	41
ACATGCG	20	7.025694E-4	45.0	1
ACGTCGA	20	7.025694E-4	45.0	28
CCGAACT	20	7.025694E-4	45.0	11
GTGACGT	20	7.025694E-4	45.0	44
ATCGCTA	20	7.025694E-4	45.0	28
GGGTCTA	25	3.8845144E-5	44.999996	8
CGTGAAT	25	3.8845144E-5	44.999996	27